Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq420 109 4e-19 seq456 107 1e-18 seq1623 102 6e-17 seq593 100 2e-16 seq48 96.9 2e-15 seq79 84.2 2e-11 >seq420 Length=40905 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||||||||| |||||||| |||| || ||| | || || Sbjct 13793 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTCG 13852 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||||||||| | ||| || ||||| | || | |||||||| || Sbjct 13853 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 13912 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | ||| ||||||| || || |||| Sbjct 13913 ATCTTGGTCTTTACATTGT--CGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCT 13970 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | ||||| ||||| || ||||| Sbjct 13971 TTCCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||| ||||| |||||||| || | ||| ||| | || || Sbjct 13565 ACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 13624 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||||||||| | || || ||||| | || | ||| ||||| || Sbjct 13625 AGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGA 13684 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || ||||||| ||||| ||||| Sbjct 13685 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTG 13744 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| || ||||| Sbjct 13745 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||||||||| |||||||| |||| || || |||| || Sbjct 14021 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCCTCT 14080 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | | || ||||| | || | |||||||| || Sbjct 14081 AGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 14140 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | | || ||||| | || || ||||| Sbjct 14141 ATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGTGTGATGGTCTTG 14200 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || | ||||| || ||||||||||| ||| Sbjct 14201 CCAGTCAATGTCTTGACAAAGATTTGCATTATG 14233 >seq456 Length=67341 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||||||||||||||||||||| | || || |||| ||| Sbjct 21374 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 21433 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| ||||||||||||||||| |||||||| | || | || ||||| || Sbjct 21434 AATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 21493 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || ||||| | || || |||||| Sbjct 21494 ATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTTT 21553 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 || || | ||||| || ||||| |||||| ||| Sbjct 21554 CCTGTTAAAGTCTTAACAAAGATCTGCATGTTGT 21587 >seq1623 Length=5066 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| || |||||||||||||||||| |||| || || | || || Sbjct 120 ACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 179 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||||||||| | ||| || ||||| | || | |||||||| || Sbjct 180 AGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGG 239 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | ||||| || | | || ||||||| || || ||||| Sbjct 240 ATCTTGGTCTT-TACGTTCTCGATGGTATCAGAGCCCTCAACCTCCAAGGTGATGGTCTT 298 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || || ||||||||||| Sbjct 299 ACCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq593 Length=58250 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||||| |||||||| || | ||| ||| | || || Sbjct 29357 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29298 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||||||||| | ||| || ||||| | || | |||||||| || Sbjct 29297 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 29238 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | || || |||| || || |||| Sbjct 29237 ATCTTGGTCTTGACATTGT--CGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCT 29180 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | |||||| || ||||||||||| Sbjct 29179 TTCCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| || ||||||||| |||||||| || | ||| ||| | || || Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||||||||| | ||| || ||||| | || | |||||||| || Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || ||||||| || || ||||| Sbjct 29009 ATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTA 28950 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || ||||||||||| Sbjct 28949 CCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||| |||||||| |||| || || | || || || ||||| |||||||| Sbjct 29796 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAA 29737 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | ||| || ||||| | || | || ||||| ||| ||||| ||| | | Sbjct 29736 GATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 29677 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | | || ||||||| ||||| ||||| || || || ||||| || Sbjct 29676 ATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTAC 29617 Query 44326 GAAGATTTGCAT 44337 ||||||||||| Sbjct 29616 AAAGATTTGCAT 29605 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| |||| ||| ||| | || || || ||||| ||||| || Sbjct 29567 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAA 29508 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 || | | || ||||| | || | |||||||| || ||||| ||| || || Sbjct 29507 ATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGAATCTTGGTCTTAACATTG 29448 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | |||||||| | || || |||| ||||| ||||| || ||||||||||| | Sbjct 29447 T--CGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTA 29390 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 29389 CAAATATTTGCAT 29377 >seq48 Length=44992 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||||||||| ||||| || |||| || ||| |||| || Sbjct 22384 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCG 22325 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||||||||| | ||| |||||||| | || | || ||||| || Sbjct 22324 AGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGA 22265 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| || | || ||||||| || || |||| Sbjct 22264 ATCTTGGTCTTTACATTGT--CGATGGTATCAGATCCCTCGACCTCCAGTGTGATGGTCT 22207 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | ||||| || ||||| ||||| Sbjct 22206 TTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| || ||||||||| |||||||| |||| | | ||| | || || Sbjct 22612 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCG 22553 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | | || ||||| | || | |||||||| || Sbjct 22552 AGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 22493 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | | || || |||| || || ||||| Sbjct 22492 ATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAGTCTTG 22433 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||| ||||| || |||||| Sbjct 22432 CCAGTGAGAGTCTTGACGAAAATCTGCATG 22403 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||||||||| |||||||| |||| || ||| | || || Sbjct 22156 ACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGATAGAGTGCGGCCATCCTCG 22097 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || || | ||| || ||||| | || | |||||||| || Sbjct 22096 AGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 22037 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || ||||| | || || ||||| Sbjct 22036 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCGACCTCAAGTGTGATGGTCTTG 21977 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || | ||||| ||||| |||||||||||| Sbjct 21976 CCAGTCAATGTCTTTACGAAAATTTGCATGATG 21944 >seq79 Length=127859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||||||||||||||||||||| | || ||| | || ||| Sbjct 118830 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCC 118771 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| ||||| ||||||||||| |||||||| | || | || ||||| || Sbjct 118770 AATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 118711 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | | |||| | ||||| |||| || ||||| | ||||| ||||| Sbjct 118710 ATCTT-AGCCTTGACGTTCTCGATGGTATCGGATCCCTCTACCTCGAGGGTAATGGTCTT 118652 Query 44308 TCC 44310 || Sbjct 118651 ACC 118649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359928954701085