Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1623 158 3e-33 seq593 152 1e-31 seq420 152 1e-31 seq48 149 2e-30 seq355 140 8e-28 seq456 138 3e-27 seq79 127 5e-24 seq1674 105 2e-17 seq2393 104 6e-17 >seq1623 Length=5066 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || || || || |||||| | ||||| || |||| || Sbjct 325 CAAATCTTTGTTAAAACCCTGACTGGTAAGACCATCACCTTGGAGGTTGAGGGCTCTGAT 266 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| || ||||| ||||||||||| || || || ||| Sbjct 265 ACCATCGAGAACGTAAAGACCAAGATCCAAGACAAGGAAGGAATCCCCCCCGATCAACAA 206 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| |||||||| || || || ||||| | |||||| |||| || ||| || Sbjct 205 CGTCTTATCTTTGCCGGAAAGCAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 146 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||| | ||| Sbjct 145 CAAAAGGAGTCTACTCTTCATTTGGTT 119 >seq593 Length=58250 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || || || ||| | ||||| || |||| ||| Sbjct 29608 CAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACCTTGGAGGTCGAGGGCTCTGAC 29667 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || |||||||| || || || ||| Sbjct 29668 ACCATCGATAATGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCACCCGATCAACAA 29727 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| || ||||| ||||| | |||||| |||| || ||| | Sbjct 29728 CGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAACATT 29787 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || ||||| || ||| | ||| Sbjct 29788 CAAAAGGAGTCAACCCTCCATTTGGTT 29814 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || ||||| || |||||||| || || || | || ||| Sbjct 29152 CAAATCTTTGTAAAGACCTTGACTGGAAAGACCATCACCCTGGAAGTTGAGGGATCTGAC 29211 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||| ||||| ||||||||||| || || || ||| Sbjct 29212 ACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAA 29271 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| || ||||| ||||| | || || | || || ||| | Sbjct 29272 CGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAACATT 29331 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 29332 CAAAAGGAATCTACTCTTCA-CTTG 29355 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || || |||||| | ||||| || | || ||| Sbjct 28924 CAAATCTTTGTAAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTTGAGGGATCTGAC 28983 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || ||||| |||||||| || || || || ||| Sbjct 28984 ACCATCGATAACGTAAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCCGATCAACAA 29043 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| || ||||| ||||| | || || | || || ||| | Sbjct 29044 CGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAACATT 29103 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || || || ||| Sbjct 29104 CAAAAGGAGTCTACTCTTCAT 29124 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || || || | || || || | || ||| Sbjct 29380 CAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCTGAC 29439 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||| ||||| |||||||| || || || || ||| Sbjct 29440 ACCATCGACAATGTTAAGACCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAACAA 29499 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || ||||| ||||| | || || |||| || ||| | Sbjct 29500 AGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTACAACATT 29559 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || ||| | ||| Sbjct 29560 CAAAAGGAATCTACTCTCCATTTGGTT 29586 >seq420 Length=40905 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| ||||| || || ||| | ||||| || | |||||| Sbjct 13542 CAGATTTTCGTCAAGACTCTCACTGGAAAGACCATTACCTTGGAGGTTGAGGGATCAGAC 13483 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| ||||||||||| || ||||||||| Sbjct 13482 ACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGACCAGCAA 13423 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || || || || ||||| | || || | || || ||| | Sbjct 13422 CGACTAATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCTGACTACAACATA 13363 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||| || || || ||| | ||| Sbjct 13362 CAAAAAGAGTCTACTCTTCATTTGGTT 13336 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || ||||| || ||||| ||| | |||||| Sbjct 13998 CAGATTTTCGTCAAGACTTTGACTGGAAAGACCATCACACTGGAGGTCGAAGGATCAGAC 13939 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| || ||||| ||||||||||| || || || ||| Sbjct 13938 ACCATCGACAATGTAAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAA 13879 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || || ||||| ||||| | ||||| |||| || ||| | Sbjct 13878 CGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGCACTCTATCCGACTACAACATT 13819 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 13818 CAAAAGGAGTCCACTCTTCA-CTTGGTT 13792 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || ||||| || ||||| || |||||||| Sbjct 14226 CAAATCTTTGTCAAGACATTGACTGGCAAGACCATCACACTTGAGGTCGAGGGCTCAGAC 14167 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 14166 ACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAA 14107 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || ||||| || || || || ||| | || ||| |||| || ||| | Sbjct 14106 AGACTCATCTTTGCTGGAAAGCAACTAGAGGACGGACGTACCCTTTCCGACTACAACATT 14047 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 14046 CAAAAGGAGTCCACTCTTCA-CTTG 14023 >seq48 Length=44992 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| || || || |||||| | || || || |||||||| Sbjct 22407 CAGATTTTCGTCAAGACTCTCACTGGCAAGACTATCACCTTGGAAGTCGAGGGCTCAGAC 22466 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 22467 ACCATCGATAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAA 22526 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| ||||| || |||||||| ||||| | || | |||| || ||| | Sbjct 22527 AGACTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGACTACAACATT 22586 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||| | ||| Sbjct 22587 CAAAAGGAGTCTACTCTTCATTTGGTT 22613 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || ||||| || ||||| || | || || Sbjct 21951 CAAATTTTCGTAAAGACATTGACTGGCAAGACCATCACACTTGAGGTCGAGGGATCTGAT 22010 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 22011 ACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAA 22070 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || || ||||| ||||| | ||||| |||| || ||| | Sbjct 22071 CGTCTCATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTATCCGACTACAACATA 22130 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 22131 CAAAAGGAGTCTACTCTTCA-CTTG 22154 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| || || || || || | ||||| || | || || Sbjct 22635 CAGATTTTCGTAAAGACTCTCACTGGCAAGACTATTACTTTGGAGGTTGAGGGATCTGAT 22694 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| ||||| ||||||||||| || || || ||| Sbjct 22695 ACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAA 22754 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| ||||| | || || | || || ||| | Sbjct 22755 CGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCTGACTACAACATT 22814 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 22815 CAAAAGGAGTCTACTCTTCA-CTTG 22838 >seq355 Length=81473 Score = 140 bits (154), Expect = 8e-28 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || ||||| || ||||| ||| | || ||| Sbjct 81295 CAAATCTTTGTAAAGACATTAACTGGCAAGACCATCACACTAGAGGTCGAAGGATCTGAC 81354 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct 81355 ACTATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAGCAA 81414 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || |||||||| |||||||| || ||||| ||||| | |||||| |||| || ||| Sbjct 81415 CGTCTTATCTTTGCCGGAAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 81471 >seq456 Length=67341 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | |||||||| || |||||||||||||| || | || ||| Sbjct 21579 CAGATCTTTGTTAAGACTTTAACAGGAAAGACCATCACCCTCGAGGTTGAGGGATCTGAC 21520 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| || ||||| || |||||||| || || |||||| Sbjct 21519 ACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCCGATCAGCAA 21460 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||| || | || || || | || ||| | ||||| ||| || Sbjct 21459 CGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACCCTTTCGGATTACAACATC 21400 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 21399 CAAAAGGAGTCTACTCTCCA-CTTGGTT 21373 >seq79 Length=127859 Score = 127 bits (140), Expect = 5e-24 Identities = 138/182 (76%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| || || || ||||||||||| || | || || ||||||||||||||||| || Sbjct 118648 AGGTAAGACCATTACCCTCGAGGTAGAGGGATCCGATACCATCGAGAACGTCAAGGCTAA 118707 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||| || ||||| || |||||||| || || |||||||| | ||||||||||| || || Sbjct 118708 GATCCAAGACAAGGAGGGAATCCCCCCCGATCAGCAACGTTTGATCTTCGCCGGCAAGCA 118767 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 | || ||||| | || ||| | ||||| ||| ||||||| || || || || || || Sbjct 118768 ATTGGAGGATGGCCGCACCCTTTCGGATTACAACATCCAAAAGGAGTCTACTCTCCA-CT 118826 Query 178127 TG 178128 || Sbjct 118827 TG 118828 >seq1674 Length=6646 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||||||||| || || || ||||| ||||| ||||||||||| Sbjct 7 AAGATCCAAGACAAGGAAGGAATCCCCCCCGATCAACAACGTCTTATTTTCGCCGGAAAG 66 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || ||| | || ||| | ||||| ||| ||||||| || || || || ||| Sbjct 67 CAACTCGAGGACGGACGTACCCTTTCGGATTACAACATCCAAAAGGAGTCCACTCTCCAT 126 Query 178125 CTTGTT 178130 | ||| Sbjct 127 TTGGTT 132 >seq2393 Length=1004 Score = 104 bits (114), Expect = 6e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 178015 ACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAG 178074 |||| ||||||||||| || ||||| ||| |||| || ||||||||||| || ||||||| Sbjct 1004 ACAAGGAAGGAATCCCACCCGACCAACAAAGACTCATTTTCGCCGGAAAGCAACTCGAAG 945 Query 178075 ATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 | || | |||||| |||| || ||| | ||||| ||||| ||||| ||| Sbjct 944 ACGGTCGCACTCTTTCCGACTACAACATTCAAAAGGAATCCACACTTCAT 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203515203601970