Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq48 111 1e-19 seq593 102 8e-17 seq420 102 8e-17 >seq48 Length=44992 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||| |||||||| ||||| ||| Sbjct 22858 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 22799 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| ||||| || || || ||||| || | || Sbjct 22798 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGG 22739 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC-GCTCGACTCCA 41813 | | |||||||| ||| | || | | ||| | | | || || | || ||| | Sbjct 22738 ATTCCTTCCTTGTCT-TGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCC-CTCAA 22681 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || |||||||||||||||||||| Sbjct 22680 CCTCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 Score = 102 bits (112), Expect = 8e-17 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || |||||| ||||||||||||||||| Sbjct 22403 GCCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGA 22344 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| ||||| ||||| ||||| || || || || || || || | || Sbjct 22343 TAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGG 22284 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTC-GCTCGACT 41810 || || |||||||| | ||| | || | ||| || | || | || || | || || Sbjct 22283 AATGCCCTCCTTGT-CTTGAATCTTGGTCTTTACATTGTCG--ATGGTATCAGATC-CCT 22228 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| || || || || || |||| ||||| || || |||||||| Sbjct 22227 CGACCTCCAGTGTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 >seq593 Length=58250 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | |||| ||| || || ||||| |||||||| ||||||||| Sbjct 29603 CCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAG 29544 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| ||||| |||||||| || || | ||||| || | ||| Sbjct 29543 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGA 29484 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC-GCTCGACTCCA 41813 | | ||||||| | ||| | || | | ||| | | | ||||| | || ||| | Sbjct 29483 ATTCCTTCCTTGT-CTTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATC-CCTCGA 29426 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || || || |||||||| || || ||||| Sbjct 29425 CTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| ||| || || |||||| |||||||| ||||| ||| Sbjct 29147 CCTCCACGAAGGCGGAGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 29088 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| ||||| ||||| || || || || ||||| || | ||| Sbjct 29087 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGA 29028 Query 41756 ACGCTCTCCTTGTCCATGAT-----TTTTTGCTTCAACGACGACACAGTGTC-GCTCGAC 41809 | | |||||||| ||| | ||| | | | ||| | ||||| | || | Sbjct 29027 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTATCGATG-----GTGTCAGATC-CC 28974 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||||| || || || ||||| || || |||||||| || || ||||| Sbjct 28973 TCAACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 >seq420 Length=40905 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||| || || ||||| ||||| ||| Sbjct 13547 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAG 13606 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| ||||||||||| || || ||||| ||||| || | ||| Sbjct 13607 AGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGA 13666 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC-GCTCGACTCCA 41813 | | |||||| || ||| | || | | ||| | | | || || | || ||| | Sbjct 13667 ATACCCTCCTTATCT-TGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCC-CTCAA 13724 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| |||||||||||||| Sbjct 13725 CCTCCAAGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| |||||| |||||||| |||||||| Sbjct 13775 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAT 13834 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||| ||||||||||| || || || || ||||| || | || Sbjct 13835 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 13894 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTC-GCTCGACTCC 41812 | | |||||||| ||| || ||| || | || | ||||| | || || Sbjct 13895 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACATTGTCG--ATGGTGTCTGATC-CTTCG 13951 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| ||||| |||||||||||||| Sbjct 13952 ACCTCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || ||| || || ||||| ||||| ||| Sbjct 13319 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAG 13378 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || |||||||| || || || || || || ||||| | || Sbjct 13379 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGG 13438 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTC-GCTCGACTCC 41812 | | |||||||| ||| || ||| || | || | ||||| | || ||| Sbjct 13439 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG--ATGGTGTCTGATC-CCTCA 13495 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| |||||||||||||| Sbjct 13496 ACCTCCAAGGTAATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462223067906000