Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq762 149 1e-30 seq1703 100 6e-16 seq1283 100 6e-16 seq367 100 6e-16 seq119 100 6e-16 seq54 95.1 3e-14 seq5 86.0 1e-11 >seq762 Length=50949 Score = 149 bits (164), Expect = 1e-30 Identities = 381/579 (66%), Gaps = 6/579 (1%) Strand=Plus/Plus Query 150607 TTGCTTCGTAGAACTTCCTAATCAGAACCGGGAATACATGTCCATTTTGTAGGTCATAAC 150666 |||| || | |||| | | ||||| |||||| |||||| |||||| | | ||| Sbjct 29990 TTGCCTCATGGAACCTGCGGATCAGCGCCGGGAGTACATGCGAGTTTTGTGGATGGTAAT 30049 Query 150667 GGTCGTTTGGGCCACTGAGGTTCGTCGGCATTACTGACACGAAATTACAACCGAATTGTT 150726 ||| || || | || || ||||| || || | ||||||||||||| | || Sbjct 30050 TGTCATTATACCCGTATAAATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGG 30109 Query 150727 TTCTGTAGGCGTCGCACATTTCGATTCCGGCTATCTTCGCTATCGCGTATGGTTTGTTAG 150786 ||||||||||| ||||||| || ||||| || || || || || || |||| || | Sbjct 30110 CCCTGTAGGCGTCACACATTTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGG 30169 Query 150787 TAGGTTCGAGAAACCCGGTCATCAGGTATTCTTCTTTGATGGGGTTTGGGGATTCTTTCG 150846 | ||| || || || || | ||||||||||| || | ||| | ||||| | |||| Sbjct 30170 TTTCTTCCAGCAAGCCAGTAAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCG 30229 Query 150847 GGTATATACAGCTACTCCCGAGGAAAACGAGTTTTTTCACATTGAATGTTTT---AGAAG 150903 |||| ||||| || || ||||| | | ||||| | || |||| || Sbjct 30230 GGTAAATACAACTGGAACCCAGGAACATTAACTTTTTGA---TGCCGTTTTTCCATGACT 30286 Query 150904 CGTGGATAACGTTCGTTTGAATCATCAGGTTGTCACGAATAAAATCACCACCAAAAGAAT 150963 | ||||| || || | ||||| || || || || |||||| | | | | | Sbjct 30287 CATGGATCACATTGTTCTGAATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGT 30346 Query 150964 TGTTTGCATGAATACCCCCTACTTTGGCAGCGGCGAGAAATACGTATTCTGGTGTTTCCA 151023 |||| ||| ||| || || |||||||| || ||||||||||| || || ||| ||||| Sbjct 30347 TGTTGGCAATAATTCCGCCCACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCT 30406 Query 151024 TTTCGAAAAATGCGGTCACTTCTTGTTGATTGGTCAAATCGAGTTCTTTAGATGATCGGG 151083 |||| || || | | ||| | ||||||||| | || || | |||| |||| Sbjct 30407 TTTCAAAGAAATCACTTACTGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGG 30466 Query 151084 TGATGATATTTGTATAACCCTCTTTCTGTAGCAGTCTTACCAGCGAGCTTCCAACCATTC 151143 | | | ||| || |||| ||||| || || || | || || ||||||| Sbjct 30467 TCAAAAGATTATTAAAACCTTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTC 30526 Query 151144 CAGTATGACCAGCCACGTAGATTTTAGAGTGCTTATCCA 151182 || ||||| || || || ||||| ||||| || |||| Sbjct 30527 CACGGTGACCGGCAACATATATTTTTGAGTGTTTTTCCA 30565 >seq1703 Length=2908 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 99 TGCCCGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAG 158 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 159 CCCCCCGTTGGGC 171 >seq1283 Length=375 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 146 TGCCCGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAG 87 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 86 CCCCCCGTTGGGC 74 >seq367 Length=125687 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 106825 TGCCCGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAG 106884 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 106885 CCCCCCGTTGGGC 106897 >seq119 Length=56996 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 55441 TGCCCGGCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGGGGGTTCGAG 55500 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 55501 CCCCCCGTTGGGC 55513 >seq54 Length=99412 Score = 95.1 bits (104), Expect = 3e-14 Identities = 282/427 (66%), Gaps = 11/427 (3%) Strand=Plus/Plus Query 230202 TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 230261 ||| ||||| ||| | || || || || || ||| | ||||| ||||| || ||||| Sbjct 88489 TGTAGAAGGCATTTTCTTCTCTGGTAGCTTTTGCTCGATCTTCTGGCTCA--AAAAAAGG 88546 Query 230262 TG--TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCAT 230319 | | ||||| || || | | || ||||| |||| | | ||||| || | ||| Sbjct 88547 GGATTAATGCCCGGTCTTAGCTTCTCCAACGAACTCATTTCTAGGGACGAAGGATTGCAT 88606 Query 230320 CAACAGTTCGGCGAGCTTAT-GTATTCAAAGCTCCAGAACAAGCTAC---CATTCGAGAC 230375 | || | | || ||| |||| | |||| | || || | || || || | Sbjct 88607 TGTGACTTTG-CTTGCCTATTGTATACCAAGCACTTAAAAAATCAACTTCCACAAGAAAG 88665 Query 230376 GGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTAT 230435 ||| ||| |||| ||||| || ||||| | || ||| |||| || | ||| || || Sbjct 88666 GGTAAAAGAAATTATTACCGATGCAGTAGCAATTGAACAGGAATTTGTCACTGATGC-AT 88724 Query 230436 TCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAG 230494 | | ||| || ||||||||||| || || | ||| |||||||||||| || || | Sbjct 88725 TACCTGTTAAGCTCATTGGCATGAATGCCGACTTGATGAAACAGTACATCGAGTTTGTCG 88784 Query 230495 CCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTG 230554 | || || | || ||| | | || | || || |||||| | || || || | Sbjct 88785 CTGATCGGTTATTACTTGAATTAGGGTGTTCTAAGGTATACAACGTGACCAATCCATTCG 88844 Query 230555 CATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTG 230614 ||||||||| | || || || |||||||| ||||| ||||| ||||| || || ||| Sbjct 88845 ACTTTATGGAGATGATCTCCCTACAAGGGAAAACCAATTTCTTTGAAAAACGCGTAGGTG 88904 Query 230615 ACTATCA 230621 | || || Sbjct 88905 AATACCA 88911 >seq5 Length=183927 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 54058 CCTGGGAAGAGGACTAAACGCACCAGTTGCCTTTGAGGGAGCGTTGAAGCTCAAAGAAAT 54117 ||| ||||| ||| ||| || || ||||| || || ||||| |||||||||||| | Sbjct 176274 CCTCGGAAGGGGATATAACTACCCGGTCGCCTTAGAAGGCGCGTTAAAGCTCAAAGAACT 176333 Query 54118 CTCTTACATTCATGCAGAGGGCTTCCTGGGAGGTGAGTTGAAACACGGCCCCCTCGCACT 54177 || || |||||||| ||||||| || | || ||| ||||||| |||||| | || || Sbjct 176334 TTCCTATATTCATGCCGAGGGCTACCCTGCAGCAGAGATGAAACATGGCCCCATTGCCCT 176393 Query 54178 CCTTGATGACAAGATTCCTGTT 54199 | ||||| | || || ||| Sbjct 176394 GGTGGATGAGGACATGCCGGTT 176415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057718636101620