Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq1335 4706 0.0 seq3699 232 3e-56 seq6381 141 4e-29 >seq1335 Length=14169 Score = 4706 bits (5218), Expect = 0.0 Identities = 2735/2816 (97%), Gaps = 2/2816 (0%) Strand=Plus/Minus Query 4859 TAATTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCCTCCTGGC 4918 || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 10184 TAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGC 10125 Query 4919 AACTTGCACAAGTCCGACAACCCTGAACGGCCAGGCGTCTTCGCTCATCTATGGGATCGC 4978 |||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 10124 AACTGGCACAAGTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGC 10065 Query 4979 CACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTG 5038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10064 CACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTG 10005 Query 5039 CTGTGTTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATGAGGTCTGCCATCTTTC 5098 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 10004 CTGTGTTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATTATGTCTGCCATCTTTC 9945 Query 5099 ATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGGAG 5158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9944 ATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGGAG 9885 Query 5159 CCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCGTTCCTTAAAGACGCCGTTTAA 5218 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 9884 CCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCGTTCCTTAAAGACGCCGTTCAA 9825 Query 5219 CATGCCGATCGCCAGACTTAAATGAGTCGGTGTGAATCCCATTAGCGTTACCGTTTCGCG 5278 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 9824 CATGCCGATCGCCAGGCTTAAATGAGTCGGTGTGAATCCCATCAGCGTTACCGTTTCGCG 9765 Query 5279 GTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACTGCTGTCT 5338 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9764 GTGCTTCTTTAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACTGCTGTCT 9705 Query 5339 GGCTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTG 5398 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 9704 GGCTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGCTGCGAAGGGCGTTTTCTTGCTG 9645 Query 5399 AGGTGTCATTGAACAAGTCCCATGTCGGCAAGCATAAGCACACAGAATATGAAGCCTGCT 5458 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 9644 AGGTGTCATTGAACAAGCCCCATGTCGGCAAGCATAAGCACACAGAATATGAAGCCCGCT 9585 Query 5459 GCCAGAAAAATGCATTCTGTTGTTGTCATGCCGGGTCTCTCTCGTTTGCTTCTGCTTTCG 5518 ||||||||||||||||| || |||||||| || |||||||||| | |||||||||||||| Sbjct 9584 GCCAGAAAAATGCATTCAGTGGTTGTCATACCTGGTCTCTCTCATCTGCTTCTGCTTTCG 9525 Query 5519 CCGCCATCATTTCCAGCTTTTGTGAAAGGGATGTGGCTAACGTATGAAATTCTTCGTCTG 5578 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 9524 CCACCATCATTTCCAGCTTTTGTGAAAGGGATGCGGCTAACGTATGAAATTCTTCGTCTG 9465 Query 5579 TTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCGAGGCTATGTGCCATCTCGA 5638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9464 TTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCGAGGCTATGTGCCATCTCGA 9405 Query 5639 TACTCGTTCTTAACTCAACGGGAGATGCTTTGTGCATACAGCTCCCCGTTTATTATTTAT 5698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9404 TACTCGTTCTTAACTCAACGGGAGATGCTTTGTGCATACAGCTCCCCGTTTATTATTTAT 9345 Query 5699 CTCCTCAGCCAGCCGCTGTGCTTTCAGGGGATTTCTGATAACAGAAAGGCCGGGAAATAC 5758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9344 CTCCTCAGCCAGCCGCTGTGCTTTCAGGGGATTTCTGATAACAGAAAGGCCGGGAAATAC 9285 Query 5759 CCAGCCTCGCTTTGTAACGGAGTAGACGAAAGTGATCGCACCTACCCGGATATTATCGTG 5818 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 9284 CCAGCCTCGCTTTGTAATGGAGTAGACGAAAGTGATCGCGCCTACCCGGATATTATCGTG 9225 Query 5819 AGGATGCTTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCC 5878 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9224 AGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCC 9165 Query 5879 ATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGC 5938 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 9164 ATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGC 9105 Query 5939 TCAACCACGACATAATGCAGGCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTAC 5998 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 9104 TCAACCACGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTAC 9045 Query 5999 CAGGCATCTTTTCGTGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTT 6058 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9044 CAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTT 8985 Query 6059 ATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTC 6118 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 8984 ATGGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTC 8925 Query 6119 AGCTCAAGGCCATTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTT 6178 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 8924 AGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTT 8865 Query 6179 TCGTCGCGATAGATGATCGGGGATTCAATAACATTCACGCCGGAAGTGAACTCAAACAGG 6238 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 8864 TCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGG 8805 Query 6239 GTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGGGGATTTCCGGA 6298 | |||||||||||||||||||||||||||||||||||| || ||||| | ||||||| Sbjct 8804 GCTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGA 8745 Query 6299 GCCACACCGGTGCAAACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGC 6358 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 8744 GCCACACCGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGC 8685 Query 6359 CACTTCTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACG 6418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8684 CACTTCTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACG 8625 Query 6419 CCGAGCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATTCCG 6478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 8624 CCGAGCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCG 8565 Query 6479 GTACGCTGCAGGATAATGTCCGGTGTCATGCAGCCACCTTCTGCTCAGAGGCTTTCTGTT 6538 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 8564 GTACGCTGCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTT 8505 Query 6539 TCAGGAATCCAAGAACTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGT 6598 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8504 TCAGGAATCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGT 8445 Query 6599 CGCGGCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGG 6658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8444 CGCGGCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGG 8385 Query 6659 CGATCAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTT 6718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8384 CGATCAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTT 8325 Query 6719 CCGGCTGGCGTTCTGCAGTGTATGCAGTATTTTCGACAATGCGCTCGGCTTCATCCTTGT 6778 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 8324 CCGGCTGACGTTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGT 8265 Query 6779 CATAGATACCAGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGCCGTA 6838 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 8264 CATAGATACCAGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTA 8205 Query 6839 ACATCCGTTTGGGATGCGACTGCCACGGGCCGGTGATTTCTCTGCCTTCGCGGGTTTTGA 6898 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 8204 ACATCCGTTTGGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGA 8145 Query 6899 ATGGTTCGCGGCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTACGGTCTT 6958 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 8144 ATGGTTCGCGGCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCT 8085 Query 6959 TGCGGTAAATCCGGCATGTACAGGATTCATTGTCCTGCTCAAAGTCCATGCCATCAAACT 7018 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 8084 TGCGGTAAATCCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACT 8025 Query 7019 GCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGT 7078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8024 GCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGT 7965 Query 7079 TCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGG 7138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7964 TCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGG 7905 Query 7139 CGACGATCAACAATGCGATGAACTGCGCATCGCTGGCATCACCTTTAAATGCCGTCTGGC 7198 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 7904 CGACGATCAGCAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGC 7845 Query 7199 GAAGAGTGGTGATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCT 7258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7844 GAAGAGTGGTGATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCT 7785 Query 7259 TCCCTGCCAGCGTTGCGAGTGCTGTACTCATCCGCTTTATACCTCTGAATCGATATCAAC 7318 |||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 7784 TCCCAGCCAGCGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAAC 7725 Query 7319 CTGGTGGTGAGCAATGGTTTCAACCATGTACCGGGTGTGTTCTGCCATGCGCTCCTGAAA 7378 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 7724 CTGATGGTGAGCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAA 7665 Query 7379 CTCAACATCGTCATCAAACGCACGGGTAATGGCTTTTTTGCTGGCCCCGTGGCGTTGCAA 7438 |||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || Sbjct 7664 CTCAACATCGTCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAA 7605 Query 7439 ATGATCGATGCAGAGTGATTCAAACAGGTGCTGGGGCAGACCTTTTCCCATGTCGTCTGC 7498 ||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 7604 ATGATCGATGCAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGC 7545 Query 7499 CAGTTCTGCCTCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGTCCAGCTCTGAGC 7558 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 7544 CAGTTCTGCCTCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGC 7485 Query 7559 CTCAAGACGATCCTGAATGTAATAAGCGTTCATGGCTGAACTCCTG-AAATAGCTGTGAA 7617 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 7484 CTCAAGACGATCCTGAATGTAATAAGCGTTCATGGCTGAACTCCTGAAAATGGCTGTGAA 7425 Query 7618 AATATCGCCCGCGAAATGCCGGGCTGATTAGGAAAACAGGAAA-GGGGGTTAGTGA 7672 |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| Sbjct 7424 AATATCGCCCGCGAAATGCCAGGCTGATTAGGAAAACAAGAAAGGGGGGTTAGTGA 7369 Score = 136 bits (150), Expect = 2e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 59508 TCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAAGC 59567 ||||||| |||||||||||| ||||||| || | ||| |||||||||||||| |||| Sbjct 10171 TCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGCAACTGGCACAAGT 10112 Query 59568 TCTGCATCCACGAACAGCCAGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAACA 59627 | || || |||| ||||| |||| || ||||||||||||||||||||||| ||||| Sbjct 10111 CCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACA 10052 Query 59628 ATGAGTAGCAGAT 59640 |||||| |||||| Sbjct 10051 ATGAGTGGCAGAT 10039 Score = 122 bits (134), Expect = 3e-23 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1696 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 1755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11409 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 11350 Query 1756 TACGTCT 1762 ||||||| Sbjct 11349 TACGTCT 11343 Score = 114 bits (126), Expect = 5e-21 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 2063 ATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 2122 ||||||||||||||||||||| |||||||||||||||||||||||||||||| || | | Sbjct 11224 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 11165 Query 2123 GCGAGGATTGTTATTCATTGCCGATATTCACCTTT 2157 ||||||| || | |||||||| | ||| ||| ||| Sbjct 11164 GCGAGGA-TGCTGTTCATTGCTGCTATACACTTTT 11131 >seq3699 Length=658 Score = 232 bits (256), Expect = 3e-56 Identities = 172/201 (86%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27114 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 27173 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 443 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 502 Query 27174 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 27233 ||| | | |||||| || | ||||||||||||||| |||||||||||||||||||||| Sbjct 503 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 562 Query 27234 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 27293 || |||| ||||||| ||| ||||||||| |||||| |||||||||||| |||||||| Sbjct 563 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 622 Query 27294 GCTGATGTTGCCGCTGGTCGT 27314 | || |||||||||||||||| Sbjct 623 GATGGTGTTGCCGCTGGTCGT 643 >seq6381 Length=773 Score = 141 bits (156), Expect = 4e-29 Identities = 144/180 (80%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 27523 TGCGCCGTATCGTCACCGTATTCCTGCATTAACAGAGACCGCAGCCAGACAGGGAGACTC 27582 ||||| |||||||| ||||||||| |||||||| ||||| |||| ||| |||| | || Sbjct 407 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGA-ATTC 465 Query 27583 CT-CTGCGAGAGTGTGCGGGGATAATCAAAAACGATACACACCGGGTTTTCTCATTTTTC 27641 || ||||| ||||||||||| ||||||||||||||| ||||||||||||| | | | Sbjct 466 CTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTG 524 Query 27642 ACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 27701 || ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 525 AC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194874808227552