Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq54 156 4e-33 seq222 111 2e-19 >seq54 Length=99412 Score = 156 bits (172), Expect = 4e-33 Identities = 573/888 (65%), Gaps = 21/888 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||||||||||| || || || ||||| || | ||| || || ||| Sbjct 88913 TTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGTAGGGAGATCATCT 88854 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| || || || ||||| || | ||| ||||| |||| | ||| | || Sbjct 88853 CCATAAAGTCGAATGGATTGGTCACGTTGTATACCTTAGAACACCCTAATTCAAGTAATA 88794 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | | ||| || ||||| || || || || ||| || ||| ||||| || || || Sbjct 88793 ACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTCATGCCAATGAGCT 88734 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 || || | || || || | |||| || || || | || || || ||||||| Sbjct 88733 TAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCATCGGTAATAATTT 88674 Query 16914 TAGCAACTCGTTCCT-CGGACGGTGTATGTTTAAGATGTT--TAAACATCAGACATGCGA 16970 || | ||| | ||| | || | |||||| || || ||| || || || | Sbjct 88673 CTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATACAATAGGCAAGCAA 88614 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 | || ||||| ||||| ||||| || || |||||||| || || | | ||||||| Sbjct 88613 AGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAGACCGGGCA 88554 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 | ||| | ||| || | ||| || |||| | || ||||| ||||| || || | Sbjct 88553 TTAATCCCCTTTTTTTGAGCCAGAAGATCGAGCAAAAGCTACCAGAGAAGAAAATGCCTT 88494 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATT 17150 | || | |||||| || || | || ||| || | ||| ||| || ||||| Sbjct 88493 CTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAACTCG---CTTGGT---CTATCCAAC 88440 Query 17151 TCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA--- 17207 |||| || ||||||| ||| | || || | || || ||||| || || | Sbjct 88439 GTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCATTGAAAAGGC 88380 Query 17208 -ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 ||||| |||| || | || | || || ||||| ||||| || || |||| Sbjct 88379 GATTTC----TTTCTTGAGGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGGTTTCT 88324 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT-TTG 17325 || || || ||||| | || ||||| || || |||||| || ||| || | ||| || Sbjct 88323 GAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGCCTCTG-TATACTG 88265 Query 17326 AACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 ||||| | || ||| |||| |||||| || || || ||||| || || || || Sbjct 88264 TACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTCACTAGCTGCAAA 88205 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG-CCAGTCCT 17444 || ||||||| || || || | | ||| | || | | | || | |||||| | Sbjct 88204 GAAAGCCAATACGTGAGAGATAAAGTGTCGTTCAT-CGTTATTCAAGCGGGCCCAGTCTT 88146 Query 17445 TTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTAT 17504 | | |||| || || | || || | ||||||||| ||||| |||| || |||| Sbjct 88145 TGAGGTCTTGACTTAAGTCAATCTCCTCAGCGGTCCAAAAGCTAGCTTCTGCTTTCTTAT 88086 Query 17505 ACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTAT 17552 | | ||||| ||||||| | || || ||||||| ||| ||| || Sbjct 88085 AAAAGTTCCATATATCATGATGTTCGATAGGGAATAATACAAATCGAT 88038 >seq222 Length=228455 Score = 111 bits (122), Expect = 2e-19 Identities = 197/286 (69%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 16963 ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAA 17022 ||| || |||| |||||||| || || || | ||||||||||| || ||||| ||||| Sbjct 135072 ACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAAAGTCAA 135131 Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082 || |||||| ||||| || || ||||| || |||| || ||| |||||| Sbjct 135132 TCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACTAAAGAA 135191 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG-TCGCGTCTTTGTTAC 17141 |||||| || |||| |||||| || | || ||||| || | | | | ||||| Sbjct 135192 TATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAAGATTTTGAATTTGT--- 135248 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 ||||||| || |||| || ||||| | ||||| || || ||||| || || | Sbjct 135249 -AATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAATAGCAT 135307 Query 17202 TAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGAT 17247 |||||| | | |||||| | | | | | ||||| |||||||| Sbjct 135308 TAAATAGTCTAGTTTTTTCATCTGGATTTTTAATATATGTATCGAT 135353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517495307506320