Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq54 206 3e-48 seq3596 136 4e-27 seq222 122 9e-23 seq1819 93.3 4e-14 >seq54 Length=99412 Score = 206 bits (228), Expect = 3e-48 Identities = 582/881 (66%), Gaps = 31/881 (4%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| |||| ||||||||||| ||||| || ||||| || | || || || | | Sbjct 88913 TTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGTAGGGAGATCATCT 88854 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCC-GTAACT 16030 ||||||| || || ||||| || | ||| |||||| |||| | ||| |||| | Sbjct 88853 CCATAAAGTCGAATGGATTGGTCACGTTGTATACCTTAGAACACCCTAATTCAAGTAA-T 88795 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 || | ||| || ||||| || || || || ||| |||||| ||| || || || || Sbjct 88794 AACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTCATGCCAATGAGC 88735 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || | || | || | ||||| ||||| || | || || || |||| || Sbjct 88734 TTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCATCGGTAATAATT 88675 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTT---AAACATTAGACACGCG 16207 || | | | | || | || || |||| ||| || | ||| ||| || || Sbjct 88674 TCTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATACAATAGGCAAGCA 88615 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 ||||| ||||| | ||||||||| || || ||||||||||| || | | || ||| Sbjct 88614 AAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAGACCGGGC 88555 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAAGAATATACC 16326 ||| ||| | ||| || | |||||| |||| |||||| | || || ||||| || || Sbjct 88554 ATTAATCCCCTTTTTTTGAGCCAGAAGATCG-AGCAAAAGCTACCAGAGAAGAAAATGCC 88496 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 || |||| |||||| || || | || ||| || | | || | | ||||| Sbjct 88495 TTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAACTCGCTTGGT------CTATCCA 88442 Query 16387 TTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 ||| ||||||| ||||||| || | ||| || | || || ||||| || || Sbjct 88441 ---ACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCATTGAA 88385 Query 16444 ----CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 | ||||| |||| ||| ||| | || || |||||||| || | || Sbjct 88384 AAGGCGATTTC----TTTCTTGAGGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGG 88329 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 ||||||| || || ||||||| || ||||| || ||||| ||| || ||||| | || Sbjct 88328 TTTCTGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGCCTCTG-TA 88270 Query 16560 T-TTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 | |||||||| | ||| ||| || | || ||||| || ||||||||||| || Sbjct 88269 TACTGTACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTCACTAGCT 88210 Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC-AGATGTAAGAATATGCCA 16677 ||||| || ||||||| ||| || || | | ||| || || ||| ||| Sbjct 88209 GCAAAGAAAGCCAATACGTGAGAGATAAAGTGTCGTTCATCGTTATTCAAG-CGGGCCCA 88151 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 ||||| | |||| || || | || || | |||||||||||||| |||| || Sbjct 88150 GTCTTTGAGGTCTTGACTTAAGTCAATCTCCTCAGCGGTCCAAAAGCTAGCTTCTGCTTT 88091 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 ||||| | ||||| ||||||| | || || || |||| Sbjct 88090 CTTATAAAAGTTCCATATATCATGATGTTCGATAGGGAATA 88050 >seq3596 Length=2072 Score = 136 bits (150), Expect = 4e-27 Identities = 381/575 (66%), Gaps = 20/575 (3%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || ||||| | || || |||||| || | || || ||| ||| Sbjct 34 AGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTT 93 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AA 16317 | ||||||||| |||| ||| || |||||||| |||| | || | | |||| || Sbjct 94 AGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAA 152 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || || || || | || ||||| | || ||||| || | | | | | | Sbjct 153 GAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA-- 210 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 ||||| | | ||||||| ||||||| |||| |||| | ||| |||| ||| Sbjct 211 ----ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGC 266 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | |||| | |||||||| | | ||| | ||||| ||||| ||||| | || Sbjct 267 ATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATA 326 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 |||| ||||| ||||| || || ||||| || ||||| || || || || || | Sbjct 327 GGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGG 386 Query 16558 TATTTGTACTTC-CACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCGTCACT 16614 | |||||||| | | | || |||| || ||||| ||||| || || |||||||| Sbjct 387 AAGCTGTACTTCGCTCATGAA---GTTCACTGCAAGGTTTTCATTTACAATGCCGTCACT 443 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAG-ATGTAAGAATAT 16673 |||||||||||| || | ||| || |||||||| ||| | | || |||| | | Sbjct 444 TGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAG-TTGT 502 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGC--CAC 16731 ||| | || || | || | || | |||||| | ||||| || || || ||| Sbjct 503 CCCAGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCAC 562 Query 16732 TGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 | ||| |||||||||| ||| || ||| ||||| Sbjct 563 T--CTTCTTATACATTTCCCAGATTTCAGGGTATT 595 >seq222 Length=228455 Score = 122 bits (134), Expect = 9e-23 Identities = 208/299 (70%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || ||| || || | ||||||| ||||| || | ||||||||||| ||||||||||| Sbjct 135069 TAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAAAGT 135128 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 || |||||||| ||||| || || |||||||| |||| | ||| || ||| Sbjct 135129 CAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACTAAA 135188 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||||||||| || || | ||||||||| | || ||||| || | || | | ||| Sbjct 135189 GAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAA---AGATTTTGAATT 135245 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 ||||||| || | |||| || ||||| | |||| ||| || ||||| || || Sbjct 135246 TGTAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAATAGC 135305 Query 16438 CTTAAACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 ||||| | | | |||||| ||| || | | ||||| ||||| || | |||||| Sbjct 135306 ATTAAATAGTCTAGTTTTTTCATCTGGATTT--TTAATATATGTATCGATTAATAAACT 135362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 219/329 (67%), Gaps = 5/329 (2%) Strand=Plus/Plus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || || || || || || || || || ||||| |||||||| || ||||| || | ||| Sbjct 135460 TCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCTTCTGGAATT 135519 Query 16562 TGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGC 16620 || ||||| | | | || | | | || | || ||||| |||||||||||||| || || Sbjct 135520 TGAACTTCACTCATGAATTTGGTG-GCTAAATTTTCATTAACGATACCGTCACTGGCTGC 135578 Query 16621 AAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA-GATGTAA--GAATATGCCA 16677 ||| || || | | || || |||| | |||| | | | ||| | | | ||| Sbjct 135579 AAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTTTAATTTATTCTCCCA 135638 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 ||| | | ||| || | | ||| | ||| |||| |||||||| ||| | || || Sbjct 135639 ATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAGCTTCAGCATT 135698 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTATCTAAGGA 16797 || || | |||||||||| | |||| || || |||| || |||||||| Sbjct 135699 CTTGTAATATGCCCAAATATCACTATATTTAATTGGGAATAATACAAATCTATCTTTATT 135758 Query 16798 TTCCTTTAACACGGGTTCATCTTCCATTT 16826 || ||||| | ||||| |||| |||| Sbjct 135759 CTCTTTTAAAATTGGTTCTTCTTGTATTT 135787 >seq1819 Length=3716 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/185 (72%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 15884 TTATCTTGTTTAGAAG-CAACACCCA--TTCTTTGGTAATCACTAACGCGTTTTTCGAAG 15940 ||||||| |||| | |||||||| || |||| ||||||| || ||||| || ||| Sbjct 3416 TTATCTTCCGTAGAGGTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAG 3475 Query 15941 AAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAA 16000 || || ||||| || | | || || | |||||||||||||| ||||| || || | Sbjct 3476 AAATTGGTTTTGCCTTGCAGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGA 3535 Query 16001 AATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGA 16060 |||| || | || ||||||||| | |||| ||||| ||||| || ||||| || Sbjct 3536 TATATTTTGGTATAACCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGT 3595 Query 16061 CACAT 16065 |||| Sbjct 3596 GACAT 3600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511364703305680