Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq1445 93.3 9e-15 >seq1445 Length=14432 Score = 93.3 bits (102), Expect = 9e-15 Identities = 285/432 (66%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 334 CCCGACGTTCTCCGGCTTGCCACCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAG 393 |||| |||||| |||| | ||||||||||| || ||||| ||| | ||||| Sbjct 11908 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 11966 Query 394 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTCGCCACTTCACTGAG 453 || | |||| |||||||| || |||||||| | ||| || || || | Sbjct 11967 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 12026 Query 454 GGGGATAATTTTAATGCCGTCGGCTTTC--CCCTG-TGGGGCATAGAGAAACAGGTTTTT 510 ||||| | | |||||||| ||||| |||| || || || | ||||||||| Sbjct 12027 CGGGATGAGCTGAATGCCGT---CTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCG 12083 Query 511 AAAGTTGTTGCGGCCTTTCGACTTGACCA-TGTTTTCGCGAAGCATTTCGATATCGTTGC 569 ||||||| | |||||||| || || || | ||| || ||||| || | Sbjct 12084 AAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTT 12142 Query 570 GATCCTGCACGGCATCGGTGACATACATGATGTATCCGGCATGTGCGCCATTTTCGTAAT 629 | |||| | || ||||| | |||| ||| | |||||||| ||| || | ||| | Sbjct 12143 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGT 12202 Query 630 ACTTGCGGCGGAACAACGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTG--AG 687 ||||||| ||||||| |||||| ||| || ||| || || |||||| || Sbjct 12203 ACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAG 12260 Query 688 ATATTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACACGGA 747 | |||||||||||||| | ||||| || ||||| | ||| ||| ||| | | || Sbjct 12261 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGA 12320 Query 748 GCCGGGCGCGAA 759 ||||| || || Sbjct 12321 ACCGGGGGCAAA 12332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107366087450340