Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq540 96.9 3e-15 seq322 96.9 3e-15 seq982 93.3 3e-14 seq391 86.0 5e-12 >seq540 Length=89862 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| ||||| || |||||||| || ||| ||| | Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| ||||| |||||||||||| | || |||||| Sbjct 84375 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAA 84434 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||||||||| ||||| || ||||||||||||||| || | || | | ||||||| Sbjct 84435 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCT--CTGATTACA 84492 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || ||||| ||||| || || || | || | ||||| |||| || Sbjct 84493 ACATCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGAGGTGG 84541 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || ||||| || ||||| || || ||| ||| | Sbjct 84087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCT 84146 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| ||||| |||||||||||| | || || ||| Sbjct 84147 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAA 84206 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||||||||| || ||||||||||||||| | || | | ||||| || Sbjct 84207 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACCCTCTCTGATTATAAC 84266 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||||||||| ||||| || Sbjct 84267 ATCCAAAAGGAATCAACTCTCCA 84289 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 25024 ATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAA 25083 ||| | | ||||||||||| || | || || || || || ||||| || || ||| Sbjct 83620 ATATTTTTAAAATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAG 83679 Query 25084 CGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGC 25143 ||| | || || | | || ||||| ||||| |||||||||||| | | Sbjct 83680 TTGAAGGTTCTGACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCC 83739 Query 25144 CCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTAT 25201 | || ||||||||||| |||||||| || ||||||||||||||| || | || | Sbjct 83740 CACCCGACCAACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCT 83799 Query 25202 GGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | ||||| || || ||||||||||| || || || |||| | ||||| |||| || Sbjct 83800 --CTGATTATAACATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGG 83857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/112 (78%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||||||||||||||||| ||||| || |||||||||||| Sbjct 83952 GATAAAGAAGGTATCCCACCCGATCAACAAAGACTTATTTTTGCCGGTAAACAATTGGAA 84011 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| || | || | | ||||| || || ||||| ||||| || ||||| Sbjct 84012 GATGGTCGTACCCTCT--CTGATTATAACATCCAAAAAGAATCAACCCTTCA 84061 >seq322 Length=112280 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || ||||| |||||| ||| ||| | Sbjct 11004 AATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 11063 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| ||||| || ||||||||| | || || || Sbjct 11064 TGATACCATTGAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGACCA 11123 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||||||| ||||| || |||||||| |||||| ||| | | || ||||| Sbjct 11124 ACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAA 11183 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| |||||||| ||||| | || | || ||| ||||||| Sbjct 11184 CATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGG 11231 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || ||||| |||||| ||| ||| | | Sbjct 11917 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCT 11976 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || ||||| |||||| | || |||||| Sbjct 11977 GACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 12036 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||||||||| ||||| || || |||||||||||| || | || | | || |||| Sbjct 12037 CAAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCT--CTGACTACA 12094 Query 25213 ATATTCAAAAGGAATCTACTCTTCA 25237 | || ||||| ||||| ||||| || Sbjct 12095 ACATCCAAAAAGAATCAACTCTCCA 12119 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || ||||| |||||| ||| ||| | Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || ||||| || ||||||||| | || |||||| Sbjct 11293 GACACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11352 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||| ||||| || ||||||||||||||| ||| | |||| ||||| Sbjct 11353 CAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 11412 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||| ||||| ||||| || Sbjct 11413 ATCCAAAAAGAATCAACTCTCCA 11435 >seq982 Length=41121 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || || |||||||||||||||||||| || |||||||||||| Sbjct 2273 GACAAAGAAGGTATCCCACCCGACCAACAAAGACTTATCTTTGCCGGTAAACAATTGGAA 2214 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | |||| ||||| || ||||||||||| || || || |||| | Sbjct 2213 GATGGTCGTACTTTATCCGACTACAACATCCAAAAGGAATCAACCCTCCATTTGGTACTT 2154 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 2153 AGATTAAGAGGTGG 2140 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || ||||| || ||| ||| ||| | Sbjct 2594 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCT 2535 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || ||||||||| | || |||||| Sbjct 2534 GACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2475 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||| || || || ||||||||||||||| ||| | |||| ||||| Sbjct 2474 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2415 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||||||||| || || || |||| Sbjct 2414 ATTCAAAAGGAATCAACCCTCCATTTGGT 2386 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||| |||||||| || | || || ||||| || ||||| || ||| ||| ||| Sbjct 2827 TAAACATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAG 2768 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | || || | | || ||||| || ||| || ||||||||| | || | Sbjct 2767 GTTCTGACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCTG 2708 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||||||||||||||| || || || |||||||| |||||| ||| | |||| | Sbjct 2707 ATCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACT 2648 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCA 25237 |||| || ||||| ||||| ||||| || Sbjct 2647 ACAACATCCAAAAAGAATCAACTCTCCA 2620 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || ||||| || ||| || ||| || Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| || || || ||||||||| | || |||||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||||||||| || || || ||||||||||||||| || | || | | ||||||| Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCT--CTGATTACA 1961 Query 25213 ATATTCAAAAGGAATCTACTCTTCA 25237 | || ||||| ||||||||||| || Sbjct 1960 ACATCCAAAAAGAATCTACTCTCCA 1936 >seq391 Length=66319 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | ||| ||||||||||||||||||||||| || |||||||| ||| Sbjct 37343 GACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAATTAGAA 37284 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| ||| | |||||||| || ||||||||||| || || || Sbjct 37283 GATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCA 37234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410757878800436