Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq540 161 1e-34 seq322 161 1e-34 seq982 154 2e-32 seq391 134 2e-26 seq339 87.8 3e-12 >seq540 Length=89862 Score = 161 bits (178), Expect = 1e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || ||||||||| ||| ||||||| |||| || |||||||| || |||| |||||| Sbjct 83627 TAAAATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTGAAGG 83686 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 ||| || ||| ||| | || ||||| ||||||||||||||||| ||||| || Sbjct 83687 TTCTGACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGA 83746 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 |||||||| || || ||||| || |||||||| || ||| |||| || | ||||| Sbjct 83747 CCAACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTA 83806 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 ||| || ||||| |||||||| | |||||||| | | ||| |||||||||| ||| Sbjct 83807 TAACATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGGTATGCAAAT 83866 Query 124775 TT 124776 || Sbjct 83867 TT 83868 Score = 156 bits (172), Expect = 6e-33 Identities = 202/277 (73%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || ||||| || || |||| |||||| | Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||||||||||||||| ||||| |||||| Sbjct 84375 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAA 84434 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||||||||| || |||||||| || ||| |||| || | ||||| || Sbjct 84435 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 84494 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTCA 124778 || |||||||||||||| | ||| | ||| | | ||| ||||||||| | ||||| Sbjct 84495 ATCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGAGGTGGTAATTAAAAT--- 84551 Query 124779 TAAAAATTGATTGTAAATAAAT-ATCACTACAAATAA 124814 |||| || || | ||||||| || |||||| || Sbjct 84552 TAAACATGTATCATTAATAAATCCTCTTTACAAAAAA 84588 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || |||||||| || |||| |||||| | Sbjct 84087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCT 84146 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||||||||||||||| ||||| || ||| Sbjct 84147 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAA 84206 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||| ||||| || |||||||| || ||| | || || | |||||||| Sbjct 84207 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACCCTCTCTGATTATAAC 84266 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||||||| | ||||| ||| | | | |||||||||| ||| || Sbjct 84267 ATCCAAAAGGAATCAACTCTCCATTTAGTTCTCAGACTCAGAGGTGGTATGCAAATTT 84324 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || ||||| || || |||| |||| | | Sbjct 83859 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCT 83918 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || ||||||||||||||||| ||||| |||||| Sbjct 83919 GACACCATTGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 83978 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||||||||| || |||||||| || ||| |||| || | |||||||| Sbjct 83979 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAAC 84038 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||||||||| | ||||| || | | | |||||||||| Sbjct 84039 ATCCAAAAAGAATCAACCCTTCATTTAGTCCTCAGACTTAGAGGTGGTAT 84088 >seq322 Length=112280 Score = 161 bits (178), Expect = 1e-34 Identities = 184/246 (75%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 124533 AATACA--ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTG 124590 |||||| |||||||| ||| ||||||| | || || |||||||| || |||| ||| Sbjct 10997 AATACATAATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTG 11056 Query 124591 AAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCAC 124650 ||| |||||| ||| ||| | || ||||| ||||| ||||||||||| |||| Sbjct 11057 AAGGTTCTGATACCATTGAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCAC 11116 Query 124651 CTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAG 124710 | || |||||||| ||||||||||| || ||||||||||| ||| |||| || | | Sbjct 11117 CCGACCAACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTG 11176 Query 124711 ATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 | || || || ||||||||||| || | ||||| || | |||||| |||| ||||| Sbjct 11177 ACTACAACATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGGTATGC 11236 Query 124771 AAAATT 124776 ||| || Sbjct 11237 AAATTT 11242 Score = 152 bits (168), Expect = 8e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || |||||||| || |||| |||||| | Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || ||||||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct 11293 GACACCATCGAAAACGTTAAAACC-AAAATCCAAGACAAAGAAGGTATCCCACCCGATCA 11351 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| ||||||||||| || |||||||| || ||| |||| || ||| || || || Sbjct 11352 ACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAA 11411 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||||||| | ||||| || | | | || |||||||| Sbjct 11412 CATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTCCGTGGTGGTAT 11462 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| | || || |||||||| || |||| |||||| | Sbjct 11461 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11520 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| || || ||||| ||||||||||| ||||| || ||| Sbjct 11521 GATACCATTGAGAATGTAAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 11580 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || |||||||| || ||||||||||| || |||| || | || || || Sbjct 11581 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGACTACAAC 11640 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | ||||| ||| | | | |||||||||| Sbjct 11641 ATCCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTTAGAGGTGGTAT 11690 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| | || || ||||| || || | || | |||| | Sbjct 11689 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCT 11748 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || ||||| ||||| ||||||||||| ||||| |||||| Sbjct 11749 GATACCATTGAAAACGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11808 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || |||||||| || ||||||||||| ||| |||| || | || || || Sbjct 11809 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 11868 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || |||||||||||||| | |||||||| | | ||| |||||||||| ||| || Sbjct 11869 ATCCAAAAAGAATCAACACTCCATTTGGTACTTAGATTAAGAGGTGGTATGCAAATTT 11926 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || |||||||| || |||| |||||| | Sbjct 11917 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCT 11976 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || |||||||| |||||||| ||||| |||||| Sbjct 11977 GACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 12036 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||||||||| || || ||||| || ||| |||| || | || || || Sbjct 12037 CAAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAAC 12096 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||||||||||||| | ||||| || Sbjct 12097 ATCCAAAAAGAATCAACTCTCCATTTAGT 12125 >seq982 Length=41121 Score = 154 bits (170), Expect = 2e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| | || || ||||| || || | || |||||| | Sbjct 2822 ATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAGGTTCT 2763 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| ||||||||||| |||||||||||| Sbjct 2762 GACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAA 2703 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| |||||||| || || ||||||||||| ||| |||| || ||| || || || Sbjct 2702 CAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACTACAAC 2643 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||||||| | ||||| || | | | |||||||||| ||| || Sbjct 2642 ATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGAGGTGGTATGCAAATTT 2585 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || |||||||| || | || |||||| | Sbjct 2594 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCT 2535 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| ||||||||||| ||||| |||||| Sbjct 2534 GACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2475 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| |||||||| || || |||||||| || ||| |||| || ||| || || || Sbjct 2474 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2415 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| |||||||| | |||||||| | | | || |||||||| Sbjct 2414 ATTCAAAAGGAATCAACCCTCCATTTGGTACTTAGACTCCGTGGTGGTAT 2365 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| | || || ||||| || || | || | |||| | Sbjct 2366 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCT 2307 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || || ||||| ||||||||||| ||||| || ||| Sbjct 2306 GACACCATCGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 2247 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||| ||||| || |||||||| || ||| |||| || ||| || || || Sbjct 2246 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2187 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| |||||||| | |||||||| | | ||| |||||||||| ||| || Sbjct 2186 ATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGGTATGCAAATTT 2129 Score = 125 bits (138), Expect = 1e-23 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || |||||||| || ||||| | |||| Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || ||||| ||||||||||| ||||| |||||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| |||||||| || || |||||||| || ||| |||| || | ||||| || Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 1959 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTCA 124778 || ||||||||||| ||| | ||||| || | | | ||||||| | ||| | Sbjct 1958 ATCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAACTAAACCCAA 1899 Query 124779 TAAAAATTGATT 124790 ||||| |||||| Sbjct 1898 TAAAAGTTGATT 1887 >seq391 Length=66319 Score = 134 bits (148), Expect = 2e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| ||||||||||| || || ||||||||||| ||||| ||||| || ||| Sbjct 37352 AAAATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAA 37293 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| |||| || ||| ||||||| || || ||||| |||||||| | ||| Sbjct 37292 CAATTAGAAGATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCAT 37233 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||| | | | || |||||| |||||| Sbjct 37232 TTAGTTCTCAGACTCCGTGGTGGTGGTAAAAA 37201 >seq339 Length=35222 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || || ||||||||| | | |||||||| || || ||||| || || |||| Sbjct 21035 AGGTATCCCCCCCGATCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTCG 21094 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||| ||||||||||||| ||||| ||||| || | ||||| || Sbjct 21095 TACTTTACAAGATTATAATATCCAAAAGGAATCGACCCTCCATTTAGT 21142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755382588563200