Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq1335 2634 0.0 seq3699 199 1e-46 seq2008 161 3e-35 seq915 84.2 6e-12 >seq1335 Length=14169 Score = 2634 bits (2920), Expect = 0.0 Identities = 1541/1594 (97%), Gaps = 2/1594 (0%) Strand=Plus/Minus Query 21041 GACAAAAAATTAGCGCAAGAAGACAAAAA--TCACCTTGCGCTAATGCTCTGTCTCAGGT 21098 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 12979 GACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAGGT 12920 Query 21099 CACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCATC 21158 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 12919 CACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCATT 12860 Query 21159 ATGTAGTCTATTTTTTATACTAAAGATATTGTAACACATTGATATTAATGATTTTTAATG 21218 ||| ||||||||||||| ||| || ||| ||| | ||||||||||| |||||| | Sbjct 12859 ATGCAGTCTATTTTTTAGACTGAATCAATTATAAGCCGTTGATATTAATTGTTTTTACCG 12800 Query 21219 TTTCACGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTT 21278 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12799 TTTCACATTCAACTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTT 12740 Query 21279 GTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTC 21338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12739 GTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTC 12680 Query 21339 CCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAG 21398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12679 CCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAG 12620 Query 21399 AAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCG 21458 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 12619 AAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCG 12560 Query 21459 CAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTGCGCG 21518 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 12559 CAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTCGTGCGCG 12500 Query 21519 CATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAATTAT 21578 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 12499 CATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATGCAATTAT 12440 Query 21579 GGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTCCGAG 21638 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 12439 GGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATATCCCGAG 12380 Query 21639 AGCATCAACATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGAC 21698 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 12379 AGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGAC 12320 Query 21699 ATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGTTG 21758 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 12319 ATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGCTG 12260 Query 21759 CCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTGCTGC 21818 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 12259 CCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATTCTGCTGC 12200 Query 21819 TTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGC 21878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12199 TTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGC 12140 Query 21879 TGCGCGAGTGGCAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTCGGAA 21938 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 12139 AGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCTCTCGGAA 12080 Query 21939 TGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCAGCCTTGCCCTCGTCTATGTA 21998 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 12079 TGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGTCTATGTA 12020 Query 21999 TCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAG 22058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12019 TCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAG 11960 Query 22059 CCCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCC 22118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11959 ACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCC 11900 Query 22119 TCTGCTGGCGAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACAGAATTATC 22178 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 11899 TCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATTATC 11840 Query 22179 ACTGTTGATTCTTGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGC 22238 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11839 ACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGC 11780 Query 22239 CTGTATAGCTTCAGTGATTGCTATCCTCCTGTCTCGGCCTAATCCGAACTCTTTACCCGT 22298 ||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||| Sbjct 11779 CTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACCCGT 11720 Query 22299 CCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATC 22358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11719 CCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATC 11660 Query 22359 CCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTA 22418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11659 CCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTA 11600 Query 22419 CTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCT 22478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11599 CTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCT 11540 Query 22479 TAACCGGAGGAGGGAATATCCTGCATTCGCGCACCCATCGACGAACTGTTTCAAGGCTTC 22538 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 11539 TAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGCTTC 11480 Query 22539 TTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGC 22598 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 11479 TTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGC 11420 Query 22599 AATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22632 |||||||||||||||||| |||| | | ||||| Sbjct 11419 AATTACACGCAAGAAAAAACCGCCATCAGGCGGC 11386 >seq3699 Length=658 Score = 199 bits (220), Expect = 1e-46 Identities = 207/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 37025 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 37084 |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 37085 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGACAAA--- 37141 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 37142 GCCGCA----TCCATC--------------ATCGCTGACATGCAGAAGCGTCAACGTGAT 37183 ||| | | | | || |||||||||||| ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 37184 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37242 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 37243 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37273 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 161 bits (178), Expect = 3e-35 Identities = 349/508 (69%), Gaps = 18/508 (4%) Strand=Plus/Plus Query 12686 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12745 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12746 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12801 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12802 ATGCGTCAGAAAACCATAGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAG 12861 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12862 TGTTGCGGCGTGGTGGCG-CAGAAAAGCCG-CGTTGAACGTTATTTCCCGTGCCGGAATC 12919 || ||||| || || | | | | || | || ||| || |||||||||||||| Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAG--TACTTCCCGTGCCGGAACA 4044 Query 12920 TTGCCGCGGCGCCGGAGGACAATTTTGTCCTTTGCCCCGAAGACTACGCAGCTGCTGAGG 12979 | ||| ||| |||| | || | ||| ||| || || |||||||| || || |||| Sbjct 4045 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 4104 Query 12980 A-CTGGG-GAACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG-- 13035 | ||||| ||| ||||||| || |||||| ||||| |||||||| | | |||| Sbjct 4105 ACCTGGGCGAA--GTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTC 4162 Query 13036 AGCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGG 13095 | || || || || ||||| || || || |||||||| ||| || ||| Sbjct 4163 ACCGCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGG 4220 Query 13096 CCGGAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCGCTGCTGGAGCGTCC 13154 || ||||||||||| || || ||| ||| || | || || ||| ||||| |||| || Sbjct 4221 CCCGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCC 4279 Query 13155 GTTTGTGCTTGGACACTTCGACTGCTGG 13182 |||||| | ||| || ||||||||| Sbjct 4280 GTTTGTACATGGCGCCTGGGACTGCTGG 4307 Score = 96.9 bits (106), Expect = 9e-16 Identities = 196/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 16436 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 16495 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 16496 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 16555 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 16556 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 16615 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 16616 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 16675 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 16676 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCC 16726 ||||||| | | || ||| ||||| || || || ||||||||||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 8935 >seq915 Length=38681 Score = 84.2 bits (92), Expect = 6e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 22906 ACATCTCTACCCCCTGCGCCCGTACTTCAGCCAGGAAAGCATCGGTGGCTGGGGTTTCGA 22965 ||||||| || ||||||||||| ||||||||||||||||| || || || |||||||||| Sbjct 9120 ACATCTCCACACCCTGCGCCCGCACTTCAGCCAGGAAAGCGTCTGTCGCCGGGGTTTCGA 9061 Query 22966 TATC 22969 |||| Sbjct 9060 TATC 9057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127009073916072