Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq982 98.7 9e-16 >seq982 Length=41121 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||| | ||||| |||| || || || |||||||||||||| ||| Sbjct 2366 TACCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGG 2425 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| |||||| | || || | || |||||||| | Sbjct 2426 ATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTG 2485 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| || || || || | ||| | |||||| | | || | Sbjct 2486 GGATACCTTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 2545 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||| ||||||| || || |||||||| ||||| Sbjct 2546 CTTCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| ||||| |||||||| ||||||||||| | || || ||| || Sbjct 1930 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCC 1989 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| |||||| | || || | || |||||||| || || || || |||||| Sbjct 1990 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 2049 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | |||||| | | || ||||| | ||| | ||||| Sbjct 2050 ATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTGATAGTTTTA 2109 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || |||||||| ||||| Sbjct 2110 CCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| || || |||||||| |||||||| ||| | ||| || ||| || Sbjct 2614 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCT 2673 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || ||| | || || | || ||||| || || || || || |||||| | Sbjct 2674 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCTTTGTCTTGA 2733 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | |||||| | | || || || | ||| | ||||| Sbjct 2734 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATTGTTTTA 2793 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||| || ||||||||||| |||||| Sbjct 2794 CCGGTCAAGGTCTTTACAAAAATTTGCATG 2823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433789296467608