Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq2439 111 6e-20 seq6260 102 3e-17 seq2461 87.8 6e-13 seq1412 84.2 8e-12 >seq2439 Length=2533 Score = 111 bits (122), Expect = 6e-20 Identities = 299/447 (67%), Gaps = 34/447 (8%) Strand=Plus/Minus Query 35947 CCGTCGTCGTCC------TCGCCGCGAGTGGTGATGTTCAGCAGTGCGGAAAGCACGTAA 36000 ||||||||||| |||||| || |||||||||||||| || | | |||||| Sbjct 1576 CCGTCGTCGTCGCGGATATCGCCG---GTCGTGATGTTCAGCAGCGCACACATCACGTAG 1520 Query 36001 CGCTTGCCGTAGCTGACCGATGATCCAAGAGACTGAACGGCGTTCTTGCTGCCACT--CG 36058 |||||||| ||| | |||||| |||| || ||| ||| || |||| || | || Sbjct 1519 CGCTTGCCATAGGTAGTCGATGAGCCAACAGCCTGTACGTCG---TTGCGACCTTTTCCG 1463 Query 36059 -TGTCTAGCGGAACGAGCATCGTCGTCTGCTCTCGGTGTCCGGCGCAGTGCATCAGAATT 36117 | || | ||| | | ||| || || ||||| ||||| || | | |||||||| ||| Sbjct 1462 ATATCAATCGGCAGGCTCATGGTGGTTTGCTCGCGGTGGCCACCCCGGTGCATCAAGATT 1403 Query 36118 CCAGTAAC-CGAAACGCCAGTCTGAACAGTCTCGACGCGGAAGCTCACTGCGAAACCGAA 36176 ||||| || | | |||| | | | | | || || |||| | | || || ||| Sbjct 1402 CCAGTGACACTGATCGCC-TTTTCAGCGTTTTCCACCTTGAAGGTGATGGCAAACCCGTG 1344 Query 36177 CCGCTGCATGATCGGCTTCACGATGTCGTTGATGTCTTCGAAGGTCGCGTAGTTGCTGCG 36236 | |||||||||||||||||| | ||| |||||| |||| || |||||| | | | Sbjct 1343 CTGCTGCATGATCGGCTTCAAGGTGTGTGTGATGTGGTCGAGCGTGGCGTAGGAGTTTCC 1284 Query 36237 CTTTTGGCCGTTGACGGTGATAGCG-CCACGCTCGGCAATGNNNNNNNNTTCGCTTTGCA 36295 | || ||| |||| || ||| |||| ||| | || |||| Sbjct 1283 TGTGTGTAGGTTAACGGCACCTTCGAACACAGTCGG-GATG---------TTGCACTGCA 1234 Query 36296 TGGCGGCCATGGATGCGTTGAACTCAGCCT-CTGCGCTGC--GGGACTGCATCCGTTCGT 36352 | ||||||| | || ||||| ||| | || ||| | ||||||||| || |||| Sbjct 1233 TTTCGGCCATTGCGGCATTGAA---AGCTTGCTCAGCTTCCTTGGACTGCATGCGCTCGT 1177 Query 36353 GCATGGCCATCAGGCGCTCCATTTTCT 36379 ||||||||| |||||||||||| |||| Sbjct 1176 GCATGGCCAGCAGGCGCTCCATCTTCT 1150 >seq6260 Length=2033 Score = 102 bits (112), Expect = 3e-17 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCG 48973 ||||| |||||||| ||| || ||||| || || |||| | ||| | |||| Sbjct 1708 TGAAGGGGTTGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCC 1649 Query 48974 GATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCA 49033 |||||| || || | |||||||| ||| | ||| | || ||||||||||| | Sbjct 1648 AGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGAACGCAGACTTGCGGGAGTCCGGCGCGA 1589 Query 49034 TCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACA 49093 ||||||| |||||||||||| | |||||||| || || || || ||||| |||| ||| Sbjct 1588 TCGAGCAGGACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACA 1529 Query 49094 GCGATAAGAAGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 || | ||||| | | ||| | | || | ||| | ||| |||| |||| ||| | Sbjct 1528 CTGAGTACAAGGGGGTTGCCGAGTTGATCCTCGGCAAGCACCGGAACGGTGAAACCGGTA 1469 Query 49154 GCGT 49157 ||| Sbjct 1468 CCGT 1465 >seq2461 Length=11543 Score = 87.8 bits (96), Expect = 6e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | | || | ||||||||||| |||| Sbjct 8658 TGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGC 8717 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 || ||| | || |||||| | | |||| | || || ||||| || |||||||| | Sbjct 8718 AGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGG 8777 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 | || ||| | | |||||||| ||||| || || || ||| |||| | | ||| | | Sbjct 8778 ATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATA 8837 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 | ||||||| |||||| | ||| | || | || |||| |||||||| Sbjct 8838 AAGGCATCGCTGAAATCATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 8888 >seq1412 Length=10105 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 1636 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180424942308144