Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq54 282 4e-71 seq222 122 8e-23 seq1819 84.2 2e-11 >seq54 Length=99412 Score = 282 bits (312), Expect = 4e-71 Identities = 511/738 (69%), Gaps = 21/738 (3%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| ||||||| || | |||||||||||||| ||||| |||| || || || | Sbjct 88915 TTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGTAGGGAGATCAT 88856 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAA 16059 |||||||| || || ||||| | || | |||| ||| || || ||||| | Sbjct 88855 CTCCATAAAGTCGAATGGATTGGTC--ACGTT-GTATACCTTAGAACACCCTAATTCAAG 88799 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||||| | ||| || ||||| || || ||||||||||| || || ||||| || || Sbjct 88798 TAATAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTCATGCCAAT 88739 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | |||||||| | ||| || || | ||| | | ||| || || || || | || Sbjct 88738 GAGCTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCATCGGTAAT 88679 Query 16180 TATATCTCTTACTACACTATTTAACGGAG--GGTTTAATAAGTGTTT---AAACATTATA 16234 || ||| |||| | | || | || | ||| |||||| || | ||| || Sbjct 88678 AATTTCTTTTAC--CCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATACAATAGG 88621 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| |||||||||||||||||||||||| || | ||||| || || ||||| Sbjct 88620 CAAGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAGA 88561 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||||| ||| | |||||| | ||| || || | | ||| |||||| ||||| Sbjct 88560 CCGGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCGAGCAAAAGCTACCAGAGAAGAAA 88501 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || ||||| || || ||||| |||| | || ||| | | || || ||| Sbjct 88500 ATGCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGC-AAAACTCGCTT-----GGTCT 88447 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| | |||||| | |||||||| |||||||||| | | | || || ||||| Sbjct 88446 ATCCAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCATTG 88387 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | |||| |||||| ||| ||| || ||||| || || | ||| || Sbjct 88386 AAAAGGCGATTTCTTTCTTGAGGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGGTT 88327 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC-GGATAT 16593 |||||||| |||||||| | || ||||| || ||||||||| || | || || | ||| Sbjct 88326 TCTGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGCCTCTGTATA- 88268 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 |||||||||| ||| |||||||||| ||||| ||||| || || || |||||||| Sbjct 88267 CTGTACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTCACTAGCTGC 88208 Query 16654 AAAAAACGCAAGTATGTG 16671 ||| || || | || ||| Sbjct 88207 AAAGAAAGCCAATACGTG 88190 >seq222 Length=228455 Score = 122 bits (134), Expect = 8e-23 Identities = 208/300 (69%), Gaps = 5/300 (2%) Strand=Plus/Plus Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 || ||| ||||||| |||||| || ||||| || | ||| || | || || ||||| || Sbjct 135069 TAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAAAGT 135128 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 | |||||||| | ||||| ||||| | ||| || || | ||| ||| ||| Sbjct 135129 CAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACTAAA 135188 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410 |||||||||||| || || ||||| || ||||| || ||| | | | ||||| | | Sbjct 135189 GAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAAG----ATTTTGAAT 135244 Query 16411 ttct-atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTG 16469 || | |||||| | ||||||| ||||| | || ||||| || | || || | Sbjct 135245 TTGTAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAATAG 135304 Query 16470 CATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 ||||||||| | ||||||| | || | |||||| ||||| |||| |||||||| Sbjct 135305 CATTAAATAGTCTAGTTTTTTCATCTGGATTTTTAATATATGTATCGATTAATAAACTAT 135364 Score = 109 bits (120), Expect = 5e-19 Identities = 178/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||| | || ||||||||||| || ||||| || ||||||||||| || || | |||| Sbjct 135451 CTATAAGTCTCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCT 135510 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | ||||| |||||| || | ||||| ||||| ||||| || || || Sbjct 135511 TCTGGAATTTGAACTTCACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGTCA 135570 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT-- 16702 || |||||||| || || || | || ||||||| | |||| ||||| | || | Sbjct 135571 CTGGCTGCAAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTTTAATTTA 135630 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || ||| ||| | | ||| |||| | ||||| || ||| | |||||||| ||||| Sbjct 135631 TTCTCCCAATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAGCT 135690 Query 16763 ACAGCCTTTTTATA 16776 |||| || || || Sbjct 135691 TCAGCATTCTTGTA 135704 >seq1819 Length=3716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 |||||||||| |||| || | || ||||||||||| ||||| |||| | || || Sbjct 3444 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 3503 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT--CCCAATTCCAA 16059 | |||||||||||||| ||||| | | | ||| ||||| | | || |||| |||| Sbjct 3504 TCTCCATAAAATCAAACGGATTGGTGGCATGATA-TATTT-TGGTATAACCCAGTTCCTG 3561 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGT 16093 || |||| || || ||||| || ||||||||| Sbjct 3562 CAGCCATCTGTCTGCAACAAACTCAATATACTGT 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462467055396400