Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1819 147 5e-30 seq332 91.5 3e-13 >seq1819 Length=3716 Score = 147 bits (162), Expect = 5e-30 Identities = 291/431 (68%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 |||||| || | ||| || | || ||||| | | ||||| |||| || ||||| Sbjct 2882 CTGGACAGCACCATTATTTATGACAGGGATTTTGGATTCGATTATTTTGGGTTTAAAACC 2823 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || || ||||| ||||| || ||||| || || | || || ||||| || || || Sbjct 2822 CTTGAAAAATCCTATCTGCTGAAAATAGAAGGACAAATTGTAGAACGCCCGCAACATTTG 2763 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 || ||||| || || || ||||||||||| || || || || || | | | | ||||| Sbjct 2762 TTTATGCGTGTTGCCGTAGGGATTCACAAAGAAGATATTGAAAGTGCGATTGCAACGTAT 2703 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACC 249021 | | |||||||| |||||| | || ||||| || || || | || || || | |||| Sbjct 2702 AACCTGATGAGTGAGCGCTGGTTTACGCATGCAACCCCAACTTTATTTAATGCAGCTACC 2643 Query 249022 GTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGC 249081 || ||| || || |||||| | || ||||||| |||||| | | || || Sbjct 2642 CCTAAACCTCAAATGTCTTCCTGCTTTTTACTGACCATGCAGGACGACAGTATTGAAGGA 2583 Query 249082 ATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTC 249141 ||||| || || | ||||| || || || ||||| || ||| || || || ||| | Sbjct 2582 ATTTACGATACTTTAAAACAAACCGCTAAAATTTCACAAAGCGCAGGTGGTATTGGTTTA 2523 Query 249142 TCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT 249201 | || |||||||| || | ||| || || || || ||||| ||| ||| || Sbjct 2522 AGCATCCATAACATCCGTGCCACGGGATCTTATATTGGTGGAACAAACGGGACCAGCAAT 2463 Query 249202 GGTATCGTACC 249212 || || ||||| Sbjct 2462 GGGATTGTACC 2452 >seq332 Length=17232 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 |||| || || ||||| || | | |||||| || ||||||||||||| ||| ||||| Sbjct 4338 TGGAAGGTGCAATTGATTATCGTAGAGATTTCGATTACGATTTCTTTGGTTTTAAAACTT 4397 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 |||| | | ||||| | ||||||| |||| | || || ||||| ||| || |||| Sbjct 4398 TGGAAAGAAGTTATCTACACAAAATTAATGGTATCATTGTAGAACGTCCTCAACATATGT 4457 Query 248903 TGATGCGAGTGGCTGTCGGGATTCA 248927 ||||||| || || | || ||||| Sbjct 4458 TGATGCGTGTTTCTTTGGGTATTCA 4482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073659448168832