Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq3699 349 8e-92 seq1335 131 4e-26 >seq3699 Length=658 Score = 349 bits (386), Expect = 8e-92 Identities = 226/248 (91%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 17319 ATGAGCAGGGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 17378 |||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 17379 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGACAAAAAC 17438 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 17439 ACCAGAGAACTGAAGCTGGCGAACGCCACCATTACTGACATGCAACAGCGCCAGCTTGAT 17498 ||||||||||||||||||||||||| | |||||||||||||| |||||||| |||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 17499 GCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT 17558 | || |||||| |||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGAT 613 Query 17559 GCTCTTCG 17566 ||||| || Sbjct 614 GCTCTGCG 621 >seq1335 Length=14169 Score = 131 bits (144), Expect = 4e-26 Identities = 81/87 (93%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 47 GGATCACTCTACCTTTTCATCAAGCCAGTCCGCCCACCACTGCATCATTTCTCTGCGCTT 106 |||| |||| || |||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 13085 GGATTACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTT 13026 Query 107 ATCGAGATACTGAGCATGGTTGTAAAT 133 ||||||||||||||| ||||||||||| Sbjct 13025 ATCGAGATACTGAGCGTGGTTGTAAAT 12999 Score = 114 bits (126), Expect = 3e-21 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1695 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 1754 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11414 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 11355 Query 1755 TTGGTTAC 1762 |||||||| Sbjct 11354 TTGGTTAC 11347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122417497832292