Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq982 102 6e-17 >seq982 Length=41121 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--T 45167 |||||||| ||||| | |||||| || || || ||||| || |||||||||||| | Sbjct 2140 CCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGAT 2199 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 ||| ||| | || |||| |||||| ||||| || || | | ||||||||||| | Sbjct 2200 AAAGT--ACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTG 2257 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| || ||||| || || ||| || | | | |||| ||| || | Sbjct 2258 GGATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGA 2317 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| ||| || || || || |||| ||||| |||||||||||||| Sbjct 2318 CTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--T 45167 ||||| | | ||| | |||||| || || || ||||| ||||||||||||||| | Sbjct 2368 CCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAT 2427 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 ||| ||| | || |||| |||||| || ||||| || | | ||||| ||||| | Sbjct 2428 AAAGT--ACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTG 2485 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| || ||||| || || ||| || | | | |||| ||| || | Sbjct 2486 GGATACCTTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAA 2545 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| ||| || || || || |||| ||||| ||||| |||||||| Sbjct 2546 CTTCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395037768353254