Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq54 248 8e-61 seq222 143 3e-29 seq1819 98.7 1e-15 >seq54 Length=99412 Score = 248 bits (274), Expect = 8e-61 Identities = 508/746 (68%), Gaps = 17/746 (2%) Strand=Plus/Minus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || ||||| |||||| ||||||| || | |||||||||||| || ||||| |||| Sbjct 88926 ATGACGCCTGCTTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGT 88867 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCT 14020 || || || | |||||||| || |||||||| || | | || ||| ||| ||| Sbjct 88866 AGGGAGATCATCTCCATAAAGTCGAATGGATTGGTCACGTTGTATACCTTAGAACACCCT 88807 Query 14021 AGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTC 14080 | ||| | || ||| | ||| || | ||||| || || || ||| || || |||| Sbjct 88806 AATTCAAGTAATAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTC 88747 Query 14081 ATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCC 14140 || || || || || ||||| | | || || | |||||| | ||| || | || || Sbjct 88746 ATGCCAATGAGCTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCA 88687 Query 14141 TCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTT---AAAA 14197 ||| | ||||| | | |||| | | | | ||| ||||| || || | | Sbjct 88686 TCGGTAATAATTTCTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATAC 88627 Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 | || || ||||| |||||||| | || || || ||| ||| |||||||| || || Sbjct 88626 AATAGGCAAGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAG 88567 Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGA 14316 | | || ||||| ||||| | |||||| | ||| || || | ||| || | | || || Sbjct 88566 CTAAGACCGGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCG-AGCAAAAGCTACCAGA 88508 Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 ||||| || || || || || ||||| || || | || ||| |||| |||| Sbjct 88507 GAAGAAAATGCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAACTCGCTT---- 88452 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 | || |||||| | ||||||||| | |||||| |||| | | || | || || || Sbjct 88451 GGTC--TATCCAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGAT 88394 Query 14437 AGCATTAAATAAATG-TTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAA 14493 ||||| || | | || ||| |||| || | ||| |||||| |||||||| || | Sbjct 88393 GGCATTGAAAAGGCGATTTCTT-TCTTGAGGATCCTT--AATGTAGGTATCAATGAGGAG 88337 Query 14494 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGC 14553 ||| |||| || || || || || | ||| ||||| || |||||||| || | || Sbjct 88336 TGAATAGGTTTCTGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGC 88277 Query 14554 TTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14613 |||| | ||||| || | ||| |||| || |||||||||||||| ||||| || Sbjct 88276 CTCTGTATACTGTACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTC 88217 Query 14614 ACTAGCTGCAAAAAATGCCAATATGT 14639 |||||||||||| || ||||||| || Sbjct 88216 ACTAGCTGCAAAGAAAGCCAATACGT 88191 >seq222 Length=228455 Score = 143 bits (158), Expect = 3e-29 Identities = 181/248 (73%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 |||||| ||||||| |||||| | || ||||| | ||| |||||||| || ||||| || Sbjct 135069 TAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAAAGT 135128 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 ||||||||||||||||||| ||||| ||||| || || | | || || ||| Sbjct 135129 CAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACTAAA 135188 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 |||||| || || || || ||||| |||| || ||||| |||| || |||| || Sbjct 135189 GAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAAGA---TTTTGAATT 135245 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | |||||| | ||||| |||| ||| || || | | | |||||||||||||| Sbjct 135246 TGTAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAATAGC 135305 Query 14440 ATTAAATA 14447 |||||||| Sbjct 135306 ATTAAATA 135313 Score = 102 bits (112), Expect = 8e-17 Identities = 223/329 (68%), Gaps = 9/329 (3%) Strand=Plus/Plus Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 ||||| | || || || || ||||| || || || ||||||||||| ||||| | |||| Sbjct 135451 CTATAAGTCTCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCT 135510 Query 14555 TCTGACCATTGTACCTCTGAGTAA--AATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612 |||| ||| || || | | | ||| | ||| |||||||||||||| ||||| | Sbjct 135511 TCTGGAATTTGAACTTC--ACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGT 135568 Query 14613 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT 14672 |||| |||||||| || || | | | ||||| | | || | || | | | || Sbjct 135569 CACTGGCTGCAAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTTTAATT 135628 Query 14673 TTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14729 | || |||||| | ||| || | |||||| | ||| || |||||||||| || Sbjct 135629 TATTCTCCCAATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAG 135688 Query 14730 CAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14789 | |||| || || || | |||| || || ||||| || || || | |||||||| Sbjct 135689 CTTCAGCATTCTTGTAATATGCCCAAATATCACTATATTTAATTGGGAATAATACAAATC 135748 Query 14790 T-TGAAGATGTTTCTTTAAGAATTGGTTC 14817 | | || | ||||| | ||||||||| Sbjct 135749 TATCTTTAT-TCTCTTTTAAAATTGGTTC 135776 >seq1819 Length=3716 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970 |||||||||| |||| || | ||| |||||||| || ||||| |||| ||| || || Sbjct 3444 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 3503 Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 14029 | |||||||||||||| ||| ||| || ||| | | | ||| | |||| ||||| Sbjct 3504 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 3562 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACAT 14067 || |||| || |||| ||||||||||| || ||||| Sbjct 3563 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACAT 3600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482298728066320