Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq540 140 2e-28 seq982 138 9e-28 seq322 129 4e-25 seq391 86.0 5e-12 >seq540 Length=89862 Score = 140 bits (154), Expect = 2e-28 Identities = 187/256 (73%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 18072 attaaaaaTACAT-TTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGT 18130 ||||| |||||| ||| |||| | || || | || |||||| || | || || || Sbjct 84569 ATTAATGATACATGTTTAATTTTAATTACCACCTCTTAATCTAAGAACGAGATGGAGGGT 84510 Query 18131 TGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGC 18190 |||||||||||| |||||||| || | | || || ||||||||||||||| || || Sbjct 84509 TGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCGGC 84450 Query 18191 ATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC-GGCAATTTGTTGCTTGA 18249 | | ||||||||||||||||| || | ||||| ||||| | | |||| | ||||| Sbjct 84449 AAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGT-CTTGA 84391 Query 18250 CCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTT 18309 | | | ||| |||||| || ||| | |||||| |||| |||||||| |||| Sbjct 84390 CATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATGGTTTTACCGGTCAAGGTTT 84331 Query 18310 TTACAAAAATTTGCAT 18325 | |||||||||||||| Sbjct 84330 TAACAAAAATTTGCAT 84315 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | ||||| |||||||||||||| ||||| || || | | || | Sbjct 84076 AGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACGA 84017 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||||||||||||| || ||| | ||||||||||||||||| || | ||||| Sbjct 84016 CCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCT 83957 Query 18228 TTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| || ||| | |||||| | | ||| |||||| | ||| ||| | || Sbjct 83956 TTATCTTGGATCTTGGT-CTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGT 83898 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| |||||||| ||||| |||||||||||||| Sbjct 83897 GATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 129 bits (142), Expect = 4e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||||||||||| || || |||||||| ||||| ||||| || || | Sbjct 83857 CCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAG 83798 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| |||| ||||||||||| || || Sbjct 83797 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGG 83738 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| | | |||| | |||||| | | ||| |||||| || Sbjct 83737 ATACCTTCTTTATCTTGGATTTTGGT-CTTGACATTTTCAATGGTGTCAGAACCTTCAAC 83679 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 ||| | ||||| |||| ||||| || || |||||||||||||||||||| ||| Sbjct 83678 TTCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCATTTTAAAA 83624 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | || || |||||||| ||||| ||||| || || | | || Sbjct 84304 AGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGG 84245 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||||||||||||| || ||| |||||||||||||||| || || | ||||| Sbjct 84244 CCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCT 84185 Query 18228 TTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| | | |||| | |||||| | | ||| |||||| || ||| | || Sbjct 84184 TTATCTTGGATTTTGGT-CTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGT 84126 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| |||||||| || || ||||| |||||||| Sbjct 84125 GATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 >seq982 Length=41121 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||||||||||| || || |||||||| ||||||||||||||||||| Sbjct 2368 CCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAT 2427 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || | ||||||||||||||||| || Sbjct 2428 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGG 2487 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || | | ||| | |||||| | | ||| |||||| || Sbjct 2488 ATACCTTCTTTGTCTTGGATCTTGGT-CTTGACATTTTCAATGGTGTCAGAACCTTCAAC 2546 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| |||||||| || || |||||||||||||| Sbjct 2547 TTCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||||||||||| || || |||||||| ||||| ||||||||||||| Sbjct 2140 CCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGAT 2199 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| |||||||||||||||| || || Sbjct 2200 AAAGTACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGG 2259 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || | | ||| | |||||| | | | | |||||| ||| Sbjct 2260 ATACCTTCTTTGTCTTGGATCTTGGT-CTTGACGTTTTCGATGGTGTCAGAACCTTCGAC 2318 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| |||||||| || |||||||| |||||||| Sbjct 2319 TTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 Score = 132 bits (146), Expect = 4e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | || || |||||||||||||| ||||||||||||| | || | Sbjct 2605 AGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGA 2664 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||||||| || || | ||||||||||||||||| || | ||||| Sbjct 2665 CCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCT 2724 Query 18228 TTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || ||| ||| | |||||| | | ||| |||||| || ||| | ||| Sbjct 2725 TTGTCTTGAATCTTGGT-CTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGT 2783 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 ||| |||| |||||||| || ||||||||||||||||| ||||| Sbjct 2784 GATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTTTAA 2828 Score = 104 bits (114), Expect = 2e-17 Identities = 170/240 (71%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 ||| ||| ||| || | ||||| || || | || || || ||||||||||| |||||| Sbjct 1904 TTTAGTT-TCCACCTCTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTG 1962 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | | || || ||||||||||||||| || || | ||||||||||||||| Sbjct 1963 TAATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGA 2022 Query 18210 TCCACGGGCACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTC--- 18265 || || | ||||| || || | | ||| | |||||| | | ||| ||||| Sbjct 2023 TCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGT-CTTGACGTTTTCAATGGTGTCTGA 2081 Query 18266 ACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || | |||||| |||| |||||||| || || |||||||||||||| Sbjct 2082 ACC---TTCTACCTCTAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 >seq322 Length=112280 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||||||||||| || ||||||||||||||||| ||||||||||| | Sbjct 11915 CCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAG 11856 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || ||| | || |||||||||||||| || Sbjct 11855 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 11796 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || | | |||| | |||||| | | ||| || ||| || Sbjct 11795 ATACCTTCTTTGTCTTGGATTTTGGT-CTTGACGTTTTCAATGGTATCAGAACCTTCTAC 11737 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| |||||||| || |||||||| |||||||| Sbjct 11736 TTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 129 bits (142), Expect = 4e-25 Identities = 193/269 (72%), Gaps = 9/269 (3%) Strand=Plus/Minus Query 18063 TAATaaaaaattaaaaa---TA--CATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTA 18117 ||||| ||||| |||| || |||||| ||| || || || | ||||| || | Sbjct 12182 TAATATAAAATAAAAAGAGGTAACCATTTTATTTAATTT--CCACCTCTAAGTCTGAGGA 12125 Query 18118 CCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCA 18177 | | || || |||||||||||||| ||||||||||| | | || || |||||||| Sbjct 12124 CTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCTTCCA 12065 Query 18178 ATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAA 18237 |||| || || ||| | ||||||||||||||||| || | ||||||||||| | Sbjct 12064 ATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGGA 12005 Query 18238 T-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 | ||| | |||||| | | ||| |||||| | || ||| | ||| || |||| Sbjct 12004 TCTTGGT-CTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAGGTAATAGTTTTA 11946 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || |||||||||||||| Sbjct 11945 CCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || || | || || |||||||||||||| ||||||||||||| Sbjct 11459 CCACCACGGAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAT 11400 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| | ||||||||||||||||| || Sbjct 11399 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGG 11340 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || | | |||| | || || | | | | |||||| || Sbjct 11339 ATACCTTCTTTGTCTTGGATTTTGGT-TTTAACGTTTTCGATGGTGTCAGAACCTTCAAC 11281 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| || |||| |||||||| || || |||||||||||||| Sbjct 11280 TTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||| || ||||||||||| ||||||||||| | | || || |||| Sbjct 11216 AGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCT 11157 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC- 18232 || |||||||| || ||| | |||||||||||||| || || | ||||| || || Sbjct 11156 TCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCT 11097 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 | | |||| | |||||| | | ||| || ||| || ||| | ||| || | Sbjct 11096 TGGATTTTGGT-CTTGACATTTTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGT 11038 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| |||||||| || |||||||| ||||||||| Sbjct 11037 TTTACCGGTCAAGGTCTTTACAAAGATTTGCATT 11004 >seq391 Length=66319 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 18084 TTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 || ||||||| | || || || ||||| || || | || || |||||||| ||||| Sbjct 37196 TTCTCTTTTTACCA-CCACCACGGAGTCTGAGAACTAAATGGAGGGTTGATTCCTTTTGG 37254 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 |||||||| || | || || |||||| |||||||| || ||| ||||||||||| Sbjct 37255 ATGTTGTAATCTTGTAAAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGTCTT 37314 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||| ||| | ||||| || || Sbjct 37315 TGTTGATCGGGGGGGATACCTTCTTTGTC 37343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379308058815630