Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq54 143 5e-29 seq3281 89.7 1e-12 >seq54 Length=99412 Score = 143 bits (158), Expect = 5e-29 Identities = 287/420 (68%), Gaps = 4/420 (1%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGT-GCATTCGCATCCATTTTCTGG 101977 |||||||||| || || ||||| || ||||| |||| || || || || || |||||| Sbjct 88476 TTGCCTTTGCAGCTGTAGAAGGCATTTTCTTCTCTGGTAGCTTTTGC-TCGATCTTCTGG 88534 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||| || ||||| | |||| ||||| | || |||||| || |||||||||||||| Sbjct 88535 CTCAAAAAAAGGGGATTAATGCCCGGTCTTAGCTTCTCCAACGAACTCATTTCTAGGGAC 88594 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||| | ||| | |||||||| ||| | ||| | ||| || || | Sbjct 88595 GAAGGATTGCATTGTGACTTTGCTTGCCTATTGTATACCAAGCACTTAAAAAATCAACTT 88654 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || ||||||| | |||||| | || || || || ||||||||| |||||| || Sbjct 88655 CCACAAGAAAGGGTAAAAGAAATTATTACCGATGCAGTAGCAATTGAACAGGAATTTGTC 88714 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 || | | | | |||||||| | | || ||||| | | ||||||| |||||||| Sbjct 88715 ACTGATGCATTACCTGTTAAGCTCATTGGCATGAATGCCGACTTGATGAAACAGTACATC 88774 Query 102218 GAATTTGTGGCAGATAAACTATTGGTTGAAAT-GGGACTAGAAAAGCACTATAATGTTAC 102276 || ||||| || ||| |||| ||||| | ||| | || | | || || || || Sbjct 88775 GAGTTTGTCGCTGATCGGTTATTACTTGAATTAGGGTGTTCTAAGGTA-TACAACGTGAC 88833 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 ||| || ||| || ||||| | || ||||| | || ||||| || |||||||| Sbjct 88834 CAATCCATTCGACTTTATGGAGATGATCTCCCTACAAGGGAAAACCAATTTCTTTGAAAA 88893 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 94825 TTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAG 94884 |||| ||||||||| || || ||||||||||| || | | | || ||||| || ||| Sbjct 89729 TTAA-AGTATCATAGATGCCATCAATGCTATCTTCCTTCATGGTGAGCAGGAAACAGGAG 89671 Query 94885 GAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAG 94944 || || || ||| | ||||| |||||| || || |||| |||||| ||||| | Sbjct 89670 GATAGCTGTGGTTTAGGCGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGTGTAAACCAC 89611 Query 94945 TGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCG 95004 | || | || | || |||| ||| | ||| |||| ||| | ||||||||| Sbjct 89610 TTTTCGGAGAGCAGGTGGTAGGTTTGGATGGCTGATGTGATATCTTCTTTGTGAATGCCT 89551 Query 95005 ACAGCCACACGCATAATCATGTCCTGAGG 95033 || ||||| ||||| | ||| | ||| || Sbjct 89550 ACGGCCACCCGCATGAGCATATGCTGCGG 89522 >seq3281 Length=2714 Score = 89.7 bits (98), Expect = 1e-12 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 ||||| ||| |||||||| ||| || | || |||||| || | | | |||| Sbjct 1961 AATCCCGATTCCAGAAGGATTATTGTGTCTGCCTGGAATGTGGCAGAGATAGAACATATG 2020 Query 35582 GCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTAATGGAGAATTGTCGT 35639 || ||||| || ||||| || || | || |||||||| ||| | ||| || || | Sbjct 2021 GCACTTCCACCCTGCCA--TGCCTTTTTCCAGTTTTATGTAGCTGACGGAAAACTGAGCT 2078 Query 35640 GCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCAT 35699 | ||| | ||||||||||| | |||| | |||| || || || || ||||| || | Sbjct 2079 GTCAGCTTTATCAGCGAAGTGCAGATATTTTTCTGGGGGTACCTTTTAACATTGCCTCCT 2138 Query 35700 ACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGGAGAGTTTATC 35758 | | | |||||| || | || ||| | | || || | ||||||| |||||| Sbjct 2139 ATGCCTTACTGACTATGATGGTTGCACAGGTTTG-CGGACTGGAGTCGGGAGATTTTATC 2197 Query 35759 CTCACTCTTGGTGACGCACACATTTATAATACCCACATTGA 35799 | || ||||| || || ||| ||||||||| ||| ||||| Sbjct 2198 CATACCCTTGGCGATGCCCACCTTTATAATAACCATATTGA 2238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989485433104170