Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq1445 800 0.0 seq7382 196 1e-45 seq6401 116 8e-22 >seq1445 Length=14432 Score = 800 bits (886), Expect = 0.0 Identities = 1038/1425 (73%), Gaps = 26/1425 (2%) Strand=Plus/Plus Query 1433 TCGAACTGCGCGAACCTCACGACCTCCTCCCCGATCATCTCATTAACCTGCTGCAGGCGC 1492 || |||| | |||||| || ||||| || || | | ||| || ||||| ||| | | Sbjct 11782 TCAAACTCCTTGAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGCCTC 11841 Query 1493 GTCTGCATTGGCGCGAGTTCCAAGCTTGCCCAGACCGCTGCTGCGTCGCTAATGGATCCG 1552 | ||||| ||| | || || | ||||| ||| | || || || | | || || Sbjct 11842 GCCTGCAACGGCTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGACCCA 11901 Query 1553 AACCCACCAGCGTTCTGCGGCACCACCCCCATCAGCTGCGGATAGACCCGCAGGCCGGCG 1612 || || || |||||||||||||| | ||||||| |||||| | |||| | ||| Sbjct 11902 AAACCGCCCGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCG 11961 Query 1613 AGCTGGTCGTCGCGGCTGATGTTCTTGATTGAGCCGAACTCGTCCTTGGCCGCCACCTCG 1672 ||| | ||||| ||||||||||| ||||| |||| ||| |||||||||||||| |||||| Sbjct 11962 AGCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCG 12021 Query 1673 CTGACCGGAATCAGTTGGATCCCCTCCTTCTTCCCGTTCGGCGCGTAGACGAACAGGTTG 1732 || ||||| || || || || || || ||||| || ||||||||| || ||||||||| Sbjct 12022 CTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTG 12081 Query 1733 CGGAAATTGCCAGGCCCCTTCGCGGTCTTCAGCGCCGTGCGCAGCGCGTCGATGTCTTCC 1792 || || ||||| ||||| |||| | ||||||| || |||||||| | ||||||||| || Sbjct 12082 CGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCT 12141 Query 1793 TCATTCTGTGCGGCGTCGGTCATGTAGAGGATGAAGCCGGCGTGGCTGCCGTTGTTGTAG 1852 || ||||| || |||||||||||||| || ||||| ||||| |||||||||||||||||| Sbjct 12142 TCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAG 12201 Query 1853 TACTTACGCCGGAACAGCGTGGCCGACTCGTTCAGCAGGGCGCTCTGTAGGGCGCAGAAC 1912 ||||| ||||||||||||||||| |||||| ||||| ||||| || || || | | Sbjct 12202 TACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAGC 12261 Query 1913 CACTCCGGCACTCCGTAGATTTCCTGATTGATGTCGGCCTCGCGCAGTTGGATCACGCTG 1972 |||||||||| |||||||||||||| ||||| ||||||||||||| ||| | Sbjct 12262 CACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGAA 12321 Query 1973 CCCTTCTCGAATTCGTGCTCATCCTTCCAGCTGCGCACCTGGTAGAACGTCTCCAGATCG 2032 || | ||||| || || |||||||||| ||||||||||| | ||||||| || Sbjct 12322 CCGGGGGCAAATTCATGTTCGTCCTTCCAGCCACGCACCTGGTAATAGGTCTCCATGTCC 12381 Query 2033 GTGCCGCGGCGCATGTACTTGGCCAGCGGCGCCTGCAGCGGCATCCGCGTACCCAGGCGA 2092 || |||||||||||||| ||||| || | | |||| ||| | || | || Sbjct 12382 ACACCCCGGCGCATGTACTTCGCCAGTGGAGGCAGCAGGCCCAT-GGTGT----TGCGGA 12436 Query 2093 GAACGAGGCTGC-----TCGAGGTATGCCG-AGCCAAATGTCAGCCAGTCCAGGGAGAAC 2146 | | | | ||| || ||||| || | |||| | ||||||||||||| |||| Sbjct 12437 GCATGTTGTTGCGCTTTTCCAGGTA-GCAGTTGCCACACCAGAGCCAGTCCAGGGCGAAC 12495 Query 2147 TGCTCGAACGTCGCCCGGCTGAGCAGGCGGTGCGGGATGAAGGTCTTGGCCAGCATGTTG 2206 ||||| || | || || | ||| ||||| || | ||| || ||| ||||||||| Sbjct 12496 TGCTCAAAGGCTTGGCGACTCAACAGCCGGTGGGGAACGAACGTGCGGGCAAGCATGTTG 12555 Query 2207 CGCTTGAACTTCAGGCCCGACTGCAGATAAACGCTCGACCCCACCGACTTGGCCAGCCCC 2266 |||||||| |||| ||||||||| || || ||||| | || || || ||||| || Sbjct 12556 CGCTTGAAGTTCA-GCCCGACTGGAGGTACACGCTGGCCCGGGTCGTTTTCGCCAGGCCG 12614 Query 2267 TCCATAGACAGCGGCGGCTCGTACCACCGCCCGTTCGGCCAGCACTCGAGATAGTCGAGG 2326 ||||| |||| ||| | || |||| || || || | ||||||||| || ||||||||| Sbjct 12615 TCCATGGACATCGGTGTTTCAAACCAACGGCCATTGGCCCAGCACTCCAGGTAGTCGAGG 12674 Query 2327 ATGCCCCGGCCGTCGAGCACCGGCATCGGATCACCGAAGGTGAAGGCCTCGGCACGGCC- 2385 || |||||| || | ||| || ||||||||||| ||||| || || | ||||| Sbjct 12675 ATCTCCCGGCTATCCAACACGGGAGCGGGATCACCGAAAGTGAACGCTTCAAC-CGGCCC 12733 Query 2386 --ACCCTGGCGCGGGATGAACTCGCCTTCCTGGGCGGACTGGACTGTAACTGGCTGCTGG 2443 || | | |||| | || || ||||| || | ||| | || | |||| Sbjct 12734 GGACTCAG--GCGGCAGCAAATCCCCTTCAACGGGTGGCTGAGCGGTGGCCAGCTGGGTT 12791 Query 2444 CGGCGGTGGCTGCGACGTTTGCTCATCCGAAAATCTCCATGCGGCCGGTATTCGCGGGGG 2503 | ||| | |||| |||||||| | | |||||| ||||| ||||| | || Sbjct 12792 CCGCGCT------TACGTCTGCTCATCAGTAGGACTCCATAAATCCGGTGTTCGCCGTGG 12845 Query 2504 TCTGCCCCTCGAGCGGCTCGTTTTGCAATGCGTGGAATAGCGCCCAGGCCAGATCGGCGT 2563 ||||||| || || || ||||| |||| |||||||| |||||||| || || ||||| | Sbjct 12846 TCTGCCCTTCAAGGGGTTCGTTGTGCAGCGCGTGGAACAGCGCCCACGCTAGGTCGGCAT 12905 Query 2564 GGCCGGTGTTGTCGTTGCGGCCGGCGGTATAGGTGAACTGGCGCCCACCGGCCGTGATGG 2623 |||| || | ||| |||| ||||| || || |||||| |||||| ||| ||||| | Sbjct 12906 GGCCCGTCTCGTCTGTGCGACCGGCCGTGTAAGTGAACATGCGCCCGGAGGCGGTGATTG 12965 Query 2624 TCTTGCGGATAGCCATCAGCGCCTGGGCCAGGTCGGTCCAGCCGGCGTCGAATTCGAGGC 2683 | |||||||||||||||| | ||| |||| || |||||||| || ||||| || || | Sbjct 12966 TTTTGCGGATAGCCATCAATGACTGCGCCATATCCGTCCAGCCCGCATCGAACTCCAGCC 13025 Query 2684 GGCCGTTCTTGATCACTGACCAGGCCTTCATGACCAACTGCGTCTTCACCTCGGGCGAGT 2743 |||||| ||||| || | ||||||| |||| | || || || ||||| |||| Sbjct 13026 TGCCGTTTTTGATGACGTCGTAAGCCTTCAGCACCAGGCGGGTTTTGACTTCGGGTGAGT 13085 Query 2744 AGCTGAAGGTGCGCACCCCCGGGAAGAACTGGCGCACCAGCTGCGCGACGCCAGAGCCCA 2803 ||||||| ||| | |||||||||||| |||||||||||| ||||| || ||| Sbjct 13086 AGCTGAACGTGGTGATGTTCGGGAAGAACTGCTTCACCAGCTGCGCCACGCCGGAACCCG 13145 Query 2804 TGCCGGTGGTGTCGACGCCGATGTAGGTGACCCAGTAGCG-CTGG 2847 |||||||| | |||| ||||||||||| ||||||||||| |||| Sbjct 13146 TGCCGGTGATATCGATCCCGATGTAGGTCACCCAGTAGCGTCTGG 13190 >seq7382 Length=778 Score = 196 bits (216), Expect = 1e-45 Identities = 355/519 (68%), Gaps = 3/519 (1%) Strand=Plus/Plus Query 31938 CCCTGCAAAGGCGCCAGCGGCCTGCTGTCGGAGAAGATGAGCCTGACTCCGAAGTACCAG 31997 ||||||||||| |||||| ||||||||||| || ||| ||| | ||||||||| Sbjct 66 CCCTGCAAAGGGTTCAGCGGACTGCTGTCGGAAAACCGCAGCAAGACCGCCAAGTACCAG 125 Query 31998 GCGCTGAACGAGTTGACGCTGCGCTGCATCTGGCTGATGGGCGAGGCATGGGCTGATGAC 32057 || ||||| | || || || || | ||||||||| ||||| | |||||| Sbjct 126 GCATTGAACCGTCTAACCCTACGTGGCGTATGGCTGATGCTGGAGGCCTTCCAGGATGAC 185 Query 32058 CCGGTGCCGCTGATCGTCTTCGAGAACGTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTG 32117 | | ||||||||| ||||||||||| || || | || || ||||| | ||| Sbjct 186 CTCCCGGAGCTGATCGTTTTCGAGAACGTGCCTCGCATCCAGAATCGTGGCCGCCGCCTC 245 Query 32118 CTGGACCAGATCAACAGCCTGCTCGGTGGCTTCGGCTACGCCGTGGCGGAAACCACTCAC 32177 || || |||||| ||||| | ||| ||| |||||| || || || || ||| Sbjct 246 CTCGATCAGATCGTTCAACTGCTGCGCCGCTACGGGTACGCCACTGCCGAGACGACGCAC 305 Query 32178 GACTGCGGCGAGCTGGGCGGTCTGGCCCAGTCGCGGAAGCGCTTCCTGCTGGTGGCGCGG 32237 || ||||||||||| || || || || || || || || || |||||||| || | || Sbjct 306 GATTGCGGCGAGCTCGGTGGCCTCGCTCAATCCCGTAAACGATTCCTGCTCGTCGGCCGC 365 Query 32238 CACGTCGAGAAAGTGCCGCCCTTCCTGTACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTC 32297 || || | || |||||| |||| | || || || | ||| ||| || || | || Sbjct 366 AACATCAACAAGGTGCCGGACTTCATCTATGAACCTGTGAAAAAGTCGCTTCGTTCGGTA 425 Query 32298 GGCGACATCCTCGGCCGCATGCCGCTGCCCGGCGATATCGACGCCGCCGGCCCGATGCAC 32357 ||||| ||||| ||||| ||||| || |||||| || |||| || ||| || |||||| Sbjct 426 GGCGATATCCTGGGCCGTATGCCTCTCCCCGGCCATTTCGA---CGGCGGTCCAATGCAC 482 Query 32358 CGTGTGCCATCCCTGCAGTGGAAGACCTGGGTTCGCCTGGCACTGGTGCGAGCCGGCAGC 32417 || || || |||| | ||||| ||| | | ||||| | || ||| |||| Sbjct 483 CGCGTACCGAACCTGTTTTTCAAGACTTGGTTGAGGCTGGCCTTCGTTGAAGCGGGCAAG 542 Query 32418 GACTGGCGCAGCCTGAACGACCTCGCCGTCGAGGACGGC 32456 |||||||| |||||| || ||||| |||||| Sbjct 543 GACTGGCGATCGCTGAACAGGCTGAATGTCGAAGACGGC 581 >seq6401 Length=970 Score = 116 bits (128), Expect = 8e-22 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 33116 CACCTGGCACAGGCCGTTTACCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCC 33175 ||||||||| | || || ||||| || |||||| ||||| || ||| || |||| || Sbjct 751 CACCTGGCATCGTCCCTTCACCACGCTCGAACTCTGTGCGCTCCAAAGCCTGATCGAGCC 810 Query 33176 CGAAGAGCAGTTGGTCCTCGACGGCCTGAGCGACAGCGACTGGCGCGAGCGGATCGGCAA 33235 |||||| | ||| |||||||| || ||| | |||||| | |||||||||||||| Sbjct 811 GGAAGAGTATCTGGAACTCGACGGGCTCTCCGATGGTGACTGGAGGGAGCGGATCGGCAA 870 Query 33236 TGCGGTTCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTT 33295 ||||| || |||| ||| ||||| || |||| || | | | || |||||||| | | Sbjct 871 CGCGGTGCCCCCGGATGCAGCCGAAGCGATCGGCGAGGCGTTCGGTACCACCCTACTCCT 930 Query 33296 GG-CTGAGGCTGGCGAGACCT 33315 || ||| || ||| |||||| Sbjct 931 GGTCTGGAGCGGGC-AGACCT 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113723900466696