Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1571 122 3e-23 >seq1571 Length=18444 Score = 122 bits (134), Expect = 3e-23 Identities = 610/956 (64%), Gaps = 47/956 (5%) Strand=Plus/Plus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| || || | ||| ||| ||| ||||| || || ||| ||| |||||| Sbjct 13929 TCTGCTTCTGCCGGAAGAGTATGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAG 13988 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC-CG 33523 | ||||| || || |||||||| || | | | ||||||| || | || Sbjct 13989 TCCACCCACGTGAGTGTGGCCAGTTCTACTTCTGCACGGTTTTTCCA----GCTCTTACG 14044 Query 33524 ATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCT 33583 || || | |||| ||||| || || ||||| | || |||| ||| ||||| || Sbjct 14045 GTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGA 14104 Query 33584 GTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG-C 33642 |||||| || || ||| | | | ||||| || ||||| | ||||| | Sbjct 14105 GTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGC 14164 Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702 | | | || || ||||| || | || ||||| | |||| | || || Sbjct 14165 CAGCGAT-ACATACTGAGAACCTTTATCACTGTGATGGA--------CCGTGC-CGGACG 14214 Query 33703 GTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACG 33762 || | ||||| | | ||| || || ||||||||||| || || ||| ||| |||| Sbjct 14215 GTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACG 14274 Query 33763 AGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACA 33822 | ||||||||| || || || | ||| ||||| || || | ||| ||||| || | Sbjct 14275 ATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAGA 14334 Query 33823 GCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGT 33882 |||| |||||||| ||| || |||||||| | |||||| ||||| | ||||| | Sbjct 14335 CGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTT 14394 Query 33883 CAGCCTTGAACTGCCGGTTGACTCGGT--CCAGCGGGCGCGGCGCGGTCACATCGG-TAA 33939 | ||| |||||| ||||| || |||| || |||| || || || ||| | | Sbjct 14395 CTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACG--GCTTTC----CGGCTGA 14448 Query 33940 TCGTCGTGCGAACACGCTTACC---GCGAACTGCGCCACGCAAG-CCCTGCAGCTTCATC 33995 | ||||| || || ||||| | |||| || ||||| ||| | | ||| Sbjct 14449 TGGTCGTACGGACCTTTTTACCCCAGAGAACACCG----GCAAGTCCCATAACCGCCATG 14504 Query 33996 AACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACC 34055 | ||| | || ||||| | ||||| | || |||||||| || ||| |||||| Sbjct 14505 AGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCAGACT 14564 Query 34056 TTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAA 34115 || |||| ||||| |||| || | | | || |||| ||||| || | Sbjct 14565 TTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTC---TTTCTTC 14621 Query 34116 AGC---TCATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAGTTG-TGCTGC 34171 ||| | |||||| | ||| ||||| | |||||| ||||| || || | || ||| Sbjct 14622 AGCCAGTTATCGCGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTCGCTGTTGC 14678 Query 34172 ATGGCGTCGGTAGCCC---GACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCC 34228 || | |||| | ||||||||||| ||| | |||| | ||| ||||||| Sbjct 14679 -TGACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCC 14737 Query 34229 GAAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCC 34288 | | || || ||| ||| | | | | ||| || | ||||||||| |||| Sbjct 14738 GTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCC 14797 Query 34289 GCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTC 34344 ||| || ||| | ||| ||| | ||||| ||||| | ||||||||||| Sbjct 14798 ACCTTCGCAAAATAAGCGGAAGCCTGGCGAAGAATATCGTTACTGCGGCGCAGTTC 14853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170656244200980