Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq7382 217 5e-52 seq4003 98.7 4e-16 seq82 96.9 1e-15 seq6401 82.4 3e-11 >seq7382 Length=778 Score = 217 bits (240), Expect = 5e-52 Identities = 380/551 (69%), Gaps = 4/551 (1%) Strand=Plus/Minus Query 43184 GCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCAGCCTCGACGAAGGC 43243 |||||| ||||| ||| |||| ||||| ||||| ||| ||| || || |||||||| Sbjct 581 GCCGTCTTCGACATTCAGCCTGTTCAGCGATCGCCAGTCCTTGCCCGCTTCAACGAAGGC 522 Query 43244 AAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGGGGGCCGCCTGCAGG 43303 || | || ||| ||||| | ||| || || || || | || ||||| | Sbjct 521 CAGCCTCAACCAAGTCTTGAAAAACAGGTTCGGTACGCGGTGCATTGGACCGCCGTCGAA 462 Query 43304 GTCGCCTGGCAGCGGCAGTTTCTCAAGGATTTCGCCGACGCCTCGCAGGCGCTTCTTTTC 43363 | ||| || || |||| | ||||| ||||| || || || ||| || | Sbjct 461 ATGGCCGGGGAGAGGCATACGGCCCAGGATATCGCCTACCGAACGAAGCGACTTTTTCAC 402 Query 43364 GGGCTCGTAAAGGAACGGAGGCACAGTCGGTTCGTGGCGCG--CAACAAGCAGGAAGCGC 43421 || || || | ||| ||||| | ||| || ||| | || |||||||| || Sbjct 401 AGGTTCATAGATGAAGTCCGGCACCTT--GTTGATGTTGCGGCCGACGAGCAGGAATCGT 344 Query 43422 TTGCGGCTCTGACCCAAACCGCCGATCTGACCGCAGTCGTGGGTGGTCTCGGCGACGGCG 43481 || ||| ||| | | || |||| || ||||| ||||| || |||||||| |||| Sbjct 343 TTACGGGATTGAGCGAGGCCACCGAGCTCGCCGCAATCGTGCGTCGTCTCGGCAGTGGCG 284 Query 43482 AAATTGTAGCTCCGCAGCAGGGCAATGATCTGATCGAGCAACTTGCGGCCACGGTTCATG 43541 | ||||| |||||||| || |||||||||||| | ||||||||| ||| | Sbjct 283 TACCCGTAGCGGCGCAGCAGTTGAACGATCTGATCGAGGAGGCGGCGGCCACGATTCTGG 224 Query 43542 ATGCGCGGCACATTTTCGAAAATGATCAGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGC 43601 ||||| ||||| || ||||||| |||||||| || || | |||| |||||| |||||| Sbjct 223 ATGCGAGGCACGTTCTCGAAAACGATCAGCTCCGGGAGGTCATCCTGGAAGGCCTCCAGC 164 Query 43602 ATCAGCCACACGCCGCGCAACGTCAGCCGATTGAGGGCCTGATACTTGGCGGTCGCGCTC 43661 |||||||| ||||| || | || || || || | ||||| |||||||||||| ||| Sbjct 163 ATCAGCCATACGCCACGTAGGGTTAGACGGTTCAATGCCTGGTACTTGGCGGTCTTGCTG 104 Query 43662 GACTGCTCGGACAGCAAGCCGGAGAAACCTTTGCATGGAGCGGACAAGAACACGATATCG 43721 | || ||||||| ||| ||| |||||||| || || || | ||| ||||||| | Sbjct 103 CGGTTTTCCGACAGCAGTCCGCTGAACCCTTTGCAGGGGGCCGAGAGGAAGACGATATGG 44 Query 43722 GGGAACTCGCC 43732 ||| | ||||| Sbjct 43 GGGTATTCGCC 33 >seq4003 Length=2163 Score = 98.7 bits (108), Expect = 4e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 43796 GTGAAAGGCCCGGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTGCCGGGAACGCCGGC 43855 ||| ||| || | |||| || | ||||| |||||||| | ||| ||| || ||| Sbjct 18 GTGGAAGTCCTTGAACTGATCACGATCGAAGAGATCGAGGACGGTTCCGCGAGATCCGCT 77 Query 43856 AAGGCGCGTGAAATCACGGATGGCCGCCGGATCGTTGTCGATGCCCCCGATGCAGCGGAA 43915 ||||| ||||| ||||| || |||| | | ||||||||| |||||||||||||| Sbjct 78 GAGGCGTTCAAAATCCCGGATTGCTGCCGCGTTGACGTCGATGCCACCGATGCAGCGGAA 137 Query 43916 CTTGGCATTCAGACTACCGACACGAGCCGATCCCTTGTTGAAGCCTTTGGCGCCGGCACC 43975 |||| | | || | || || |||| | |||||||| ||||| || || | || Sbjct 138 CTTGCCTTGGAGGTTCCCTACGCGAGGGTTGGCTTTGTTGAAACCTTTAGCTCCACCGCC 197 Query 43976 GAGCCCGCAAAACAGATGAAAGTG 43999 |||||||| ||||| || || || Sbjct 198 CAGCCCGCAGAACAGGTGGAAATG 221 >seq82 Length=463168 Score = 96.9 bits (106), Expect = 1e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 44066 GATCATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTC 44125 || ||||||||| || | ||| |||||||| || || | ||| | ||||||| Sbjct 393129 GACCATGCCGAGGGCGTTCATGTACAGCTCGAGGATCGCTTCCTCTTCCTTGCGCTCGTT 393070 Query 44126 GGTGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCC 44185 | |||| ||||||||| || | | | || | |||||||| ||| ||||| || Sbjct 393069 CGCATCCTTCTTGCGCAGGCGGACGATCGTGCGGATGATCTTGGTGTCGTAGCCGCGGCC 393010 Query 44186 CTTTGCCTC-GCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCA 44244 ||| || || ||| | ||| |||||||||||||| | || ||||||||||||| | Sbjct 393009 CTTGGCTTCCGCCAT-CACTTCCTTGATGTCGTCCTGAAGCGTGGTCTTTTCTTCCTCAA 392951 Query 44245 AGCGTTCGATGCGGTGGATGAA 44266 ||| |||||||| | |||||| Sbjct 392950 GGCGCTCGATGCGCTCGATGAA 392929 >seq6401 Length=970 Score = 82.4 bits (90), Expect = 3e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 41910 GTCTCGCCGGTCATGGCGAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCC 41969 |||| ||| || | | || || || ||||| || | | ||| ||||||| || Sbjct 948 GTCTGCCCGCTCCAGACCAGGAGTAGGGTGGTACCGAACGCCTCGCCGATCGCTTCGGCT 889 Query 41970 GCATCCGGAGGTACCGCGTTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTGGCCGTCG 42029 |||||||| || |||||||| ||||| ||||| | ||| | |||||| | |||||| Sbjct 888 GCATCCGGGGGCACCGCGTTGCCGATCCGCTCCCTCCAGTCACCATCGGAGAGCCCGTCG 829 Query 42030 AGGGTGA-ATATCTCGTCTGGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGT 42088 || | ||| ||| || || || | ||||| || | ||| | ||||| ||||| Sbjct 828 AGTTCCAGATA-CTCTTCCGGCTCGATCAGGCTTTGGAGCGCACAGAGTTCGAGCGTGGT 770 Query 42089 GAACGGACGATGCCACGTG 42107 ||| ||||||||||| ||| Sbjct 769 GAAGGGACGATGCCAGGTG 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183592649850264