Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq3751 105 2e-18 seq3980 82.4 2e-11 >seq3751 Length=10017 Score = 105 bits (116), Expect = 2e-18 Identities = 278/417 (67%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 30400 ACGGCGTGGCGACGGCTTATGTGGAAGGCGGC-ACGTTGCGGATCCAGCGTTCCGTAACC 30458 ||||| | || || ||||| |||||||| |||| ||| || ||||| || | ||| Sbjct 3392 ACGGCATCGCCACCGCTTACTACGAAGGCGGTTACGT-GCGCATTCAGCGGGCCATCACC 3334 Query 30459 ACATACAAAAAGAATGCATATGGCGTGGCAGACAACAGCTATCTGGACAGTGAAACACTG 30518 || ||| | ||||| || | ||| ||| ||||| |||||||||||| ||||| ||| Sbjct 3333 ACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATTCCTATCTGGACAGCGAAACCCTG 3274 Query 30519 CATACCAG--CGCATATGTTCTTCGCAAACTGAAATCGGTCATCACAAGCAAGTACGGAC 30576 | ||||| || | | | | ||| ||| | || ||||| ||||||||||| | Sbjct 3273 C--ACCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGC 3216 Query 30577 GCCACAAGCTGGCAAATGATGGTACCCGTTTTGGTCCTGGGCAGGCGATTGTTACTCCTG 30636 ||||||| || || ||| || || || ||||| | || ||| |||| || || || Sbjct 3215 GCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGA 3156 Query 30637 CCGTTATCAAAGGGGAGCTTCTGGCGACATATCGTC-AGATGGAGCGTGCCGGTATTGTG 30695 | ||| || ||||| | || || || | || | || | | || |||| Sbjct 3155 GCACCATCCGCGGTGAGCTGATTGC-CCAGTACGCCAAGCTCGAACTGGAAGGCCATGTG 3097 Query 30696 GAAAATTACGATCTGTTTAAACAGTATCTGATAGTTGAGCGTGATGCGGATAACCCGAAC 30755 || || ||| ||||| || | ||||| || ||||| || | |||||| | Sbjct 3096 GAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCGAGCGCGACAGCCAGGACCCGAGC 3037 Query 30756 CGACTGAACACGCTGTTCCCGCCGGATTATGTTAACCAGTTACGTGTCTTTGCGGTG 30812 || | ||| |||||||||||||||||| || ||| | | || || || ||| || Sbjct 3036 CGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACGGGCTGCGGGTGTTCGCGCTG 2980 >seq3980 Length=861 Score = 82.4 bits (90), Expect = 2e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 15528 TATCCTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAACCCGCCGCCTGGCGGGTTTTT 15587 ||| ||||||||||||||||||||| |||||||||||||||||||| | || ||||||| Sbjct 527 TATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCTGGTTTTT 586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136105834059756