Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq3751 122 2e-23 seq2982 89.7 1e-13 >seq3751 Length=10017 Score = 122 bits (134), Expect = 2e-23 Identities = 299/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 8516 CGGTTCACGATGACCGAGCAGCAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8575 || ||||| ||||||||| || | ||||| | ||| | || || || || | Sbjct 3429 CGCTTCACTCTGACCGAGCGCCAATCGCTGCTCAACTACGGCATCGCCACCGCTTACTAC 3370 Query 8576 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAATGCTTACGGG 8635 ||| |||| ||||||||||||| | ||||||| ||| ||| || || | ||| Sbjct 3369 GAAGGCGGTTACGTGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGC 3310 Query 8636 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGT--GCGTATGTACTGC 8693 ||||| || ||| || |||||||| || ||||| ||||| || | | | ||| Sbjct 3309 CAGGCGGACAATTCCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGC 3252 Query 8694 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 8753 || ||| | ||| || ||||| ||||||||||| ||||| || || ||||| | Sbjct 3251 GCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCA 3192 Query 8754 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTAATCAAAGGGGAACTGCTGG 8813 | |||||||| |||| ||| |||| ||||||||| ||| || || ||| | | Sbjct 3191 CGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTG 3132 Query 8814 CAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAGT 8873 | ||| |||| || | | || ||||| ||| ||| ||||| || Sbjct 3131 CCCAGTACGCCAAGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGC 3072 Query 8874 ACCTGGTTGTGGAGCGTGA-TGCCAGCGTTCCGAACCGCCTGAACACGCTGTTCCCGCCT 8932 ||||| | || ||||| || ||||| | |||| ||| | ||| |||||||||||| Sbjct 3071 ACCTGATCGTCGAGCGCGACAGCCAG-GACCCGAGCCGGGTCAACGTGCTGTTCCCGCCG 3013 Query 8933 GACTATGTTAACCAGTTGCGTGTTTTTGC 8961 || || || ||| | |||| || || || Sbjct 3012 GATTACGTCAACGGGCTGCGGGTGTTCGC 2984 >seq2982 Length=1456 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 20592 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 20643 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118504259121168