Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq322 91.5 1e-13 seq1819 86.0 6e-12 seq540 86.0 6e-12 seq982 82.4 8e-11 >seq322 Length=112280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| || | || || |||||||| ||||| || ||| | || | ||||| Sbjct 11441 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 11382 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||||||| | || || | ||| |||||||| || || ||||||||||| || Sbjct 11381 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTC-TTG 11323 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||| |||||| | | ||| | ||||| | || || || | ||| | || || Sbjct 11322 GATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTTTT 11263 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||| || || || || ||||||||| || Sbjct 11262 ACCGGTCAAGGTCTTGACAAAAATTTGCATACCT 11229 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | ||||| |||| ||||| |||||||| ||||| || || Sbjct 11231 CCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11172 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | || || | ||| || ||||| || Sbjct 11171 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGG 11112 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| || | | ||| | || || | || || Sbjct 11111 ATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACT 11052 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || |||||||| || ||||| || |||||||| Sbjct 11051 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 >seq1819 Length=3716 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 || || || || || ||||| || ||| |||| || || || || || | || | || Sbjct 3675 GACGCGGTAGAAATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGG 3616 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 ||||| || | |||||| |||| || ||||||||||| |||||| | || | | Sbjct 3615 ATGAATGCAAAACTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAA 3556 Query 52957 CTCGGTCA-GCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATC 53015 || ||| | || ||||| ||| |||| || || ||| |||||| | | || || Sbjct 3555 CTGGGTTATACCAAAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTC 3497 Query 53016 GCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA-CAAAA 53065 || | |||||||| || || || |||| ||||||||| || || ||||| Sbjct 3496 CCTGCAAGGCAAAACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 3446 >seq540 Length=89862 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| |||| || || |||||||| ||||||||||| | || | ||||| Sbjct 84067 ACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCC 84008 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||| ||| | || || | ||| |||||||| || || |||||||| || | Sbjct 84007 AATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGG 83948 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | ||| | ||||| | | ||| || || | || | || || Sbjct 83947 ATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGTGATTGTTTTA 83888 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| ||||| || || ||||||||| Sbjct 83887 CCGGTCAAGGTTTTAACAAAAATTTGCATA 83858 >seq982 Length=41121 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| || | ||||| |||||||| ||||| ||||| | || | ||||| Sbjct 1930 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCC 1989 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||||||||| | || || | ||| |||||||| || || ||||||||||| | Sbjct 1990 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 2049 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | ||| | ||||| | || ||||| | ||| | || || Sbjct 2050 ATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTGATAGTTTTA 2109 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| || || || || ||||||||| Sbjct 2110 CCGGTCAAGGTCTTGACAAAAATTTGCATA 2139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496015794980800