Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq54 257 2e-63 seq222 149 6e-31 seq1819 98.7 1e-15 >seq54 Length=99412 Score = 257 bits (284), Expect = 2e-63 Identities = 600/896 (67%), Gaps = 17/896 (2%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || ||||| |||||| ||||||| || | |||||||||||| || ||||| |||| Sbjct 88926 ATGACGCCTGCTTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGT 88867 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT 13688 || || || | |||||||| || |||||||| | | | || ||| ||| ||| Sbjct 88866 AGGGAGATCATCTCCATAAAGTCGAATGGATTGGTCACGTTGTATACCTTAGAACACCCT 88807 Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 | ||| | || ||| | |||||| | |||||| || || || ||| || || |||| Sbjct 88806 AATTCAAGTAATAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTC 88747 Query 13749 ATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCC 13808 || || || || || ||||| | | || || | |||||| | ||| || | || || Sbjct 88746 ATGCCAATGAGCTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCA 88687 Query 13809 TCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT---AAAA 13865 || | ||||| | | | | || | | | | ||| ||||| || || | | Sbjct 88686 TCGGTAATAATTTCTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATAC 88627 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 | || || ||||| |||||||| | || || || ||| ||| |||||||| || || Sbjct 88626 AATAGGCAAGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAG 88567 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC-CCGGA 13984 | | || ||||| ||||| | |||||| | ||| || || | |||||| | || || Sbjct 88566 CTAAGACCGGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCG-AGCAAAAGCTACCAGA 88508 Query 13985 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14044 ||||| || || || || || ||||| || || | || ||| |||| |||| Sbjct 88507 GAAGAAAATGCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAACTCGCTT---- 88452 Query 14045 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 | || |||||| | ||||||||| | |||||| |||| | | || | || || || Sbjct 88451 GGTC--TATCCAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGAT 88394 Query 14105 AGCATTAAATAAAT-ATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAA 14161 ||||| || | ||| ||| |||| || | ||| |||||| |||||||| || | Sbjct 88393 GGCATTGAAAAGGCGATTTCTT-TCTTGAGGATCCTT--AATGTAGGTATCAATGAGGAG 88337 Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221 ||| |||| || || || || || | ||| ||||| || ||||||||| || | || Sbjct 88336 TGAATAGGTTTCTGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGC 88277 Query 14222 TTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281 || | | |||||||| | ||| |||| || |||||||||||||| ||||| || Sbjct 88276 CTCTGTATACTGTACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTC 88217 Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341 |||||||||||| || ||||||| || ||||||| | | || || || || | Sbjct 88216 ACTAGCTGCAAAGAAAGCCAATACGTGAGAGATAAAGTGTCGTTCATCGTTATTCAAGCG 88157 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 ||| || | || | | | || | || ||| | |||||||| ||||| | Sbjct 88156 GGCCCAGTCTTTGAGGTCTTGACTTAAGTCAATCTCCTCAGCGGTCCAAAAGCTAGCTTC 88097 Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14457 ||||| ||||| | |||||| || | || | ||||| || | |||||||| Sbjct 88096 TGCTTTCTTATAAAAGTTCCATATATCATGATGTTCGATAGGGAATAATACAAATC 88041 >seq222 Length=228455 Score = 149 bits (164), Expect = 6e-31 Identities = 215/300 (72%), Gaps = 5/300 (2%) Strand=Plus/Plus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 |||||| ||||||| |||||| | || ||||| | ||| |||||||| || ||||| || Sbjct 135069 TAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAAAGT 135128 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 ||||||||||||||||||| ||||| ||||| || || | | ||| || ||| Sbjct 135129 CAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACTAAA 135188 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 |||||| || || || || ||||| |||| || ||||| |||| || |||| || Sbjct 135189 GAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAAGA---TTTTGAATT 135245 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 | |||||| | ||||| |||| ||| || || | | | |||||||||||||| Sbjct 135246 TGTAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAATAGC 135305 Query 14108 ATTAAATA-AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 |||||||| || | || || | | | || ||| |||||||| || | ||| |||| Sbjct 135306 ATTAAATAGTCTAGT-TTTTTCATCTGGATTTTTAATATATGTATCGATTAATAAACTAT 135364 Score = 104 bits (114), Expect = 2e-17 Identities = 205/301 (68%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 ||||| | || || || || ||||| || || || ||||||||||| || || | |||| Sbjct 135451 CTATAAGTCTCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCT 135510 Query 14223 TCCGACCATTGTACTTCCGAGTAA--AATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 || | ||| ||||| | | | ||| | ||| |||||||||||||| ||||| | Sbjct 135511 TCTGGAATTTGAACTTC--ACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGT 135568 Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340 |||| |||||||| || || | | | ||||| | | || | || ||| | || Sbjct 135569 CACTGGCTGCAAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTTTAATT 135628 Query 14341 TTTT---CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14397 | || |||||| | | ||| || | |||||| | ||| || |||||||||| || Sbjct 135629 TATTCTCCCAATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAG 135688 Query 14398 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14457 | |||| || || || | |||| || || ||||| || || || | |||||||| Sbjct 135689 CTTCAGCATTCTTGTAATATGCCCAAATATCACTATATTTAATTGGGAATAATACAAATC 135748 Query 14458 T 14458 | Sbjct 135749 T 135749 >seq1819 Length=3716 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 |||||||||| |||| || | ||| |||||||| || ||||| |||| ||| || || Sbjct 3444 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 3503 Query 13639 TTTCCATAAAATCAAATGGATTTATTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 13697 | |||||||||||||| ||| || || ||| | | | ||| | |||| ||||| Sbjct 3504 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 3562 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACAT 13735 || |||| || |||| |||||||||||| || ||||| Sbjct 3563 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACAT 3600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479681382431600