Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq54 288 9e-73 seq222 131 2e-25 seq1819 89.7 5e-13 >seq54 Length=99412 Score = 288 bits (318), Expect = 9e-73 Identities = 606/896 (68%), Gaps = 17/896 (2%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || ||||| |||||| ||||||| || | ||||||||| || || ||||| |||| Sbjct 88926 ATGACGCCTGCTTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGT 88867 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCT 13476 || || || | |||||||| ||||||||||| || | | || ||| ||| ||| Sbjct 88866 AGGGAGATCATCTCCATAAAGTCGAATGGATTGGTCACGTTGTATACCTTAGAACACCCT 88807 Query 13477 AGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13536 | ||| | |||||| | |||||| | |||||| || || || ||| || || |||| Sbjct 88806 AATTCAAGTAATAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTC 88747 Query 13537 ATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCC 13596 || || || || || ||||| | | || ||| | |||||| | ||| || | || || Sbjct 88746 ATGCCAATGAGCTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCA 88687 Query 13597 TCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTT---TAAAA 13653 ||| | ||||| || | | || | | | | ||| ||||| || | || | Sbjct 88686 TCGGTAATAATTTCTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATAC 88627 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 | || || ||||| |||||||| | || || || ||| ||| |||||||| || || Sbjct 88626 AATAGGCAAGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAG 88567 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGA 13772 | | || ||||| ||||| | |||||| | ||| || || | ||| || | | || || Sbjct 88566 CTAAGACCGGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCG-AGCAAAAGCTACCAGA 88508 Query 13773 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT 13832 ||||| || || || || || ||||| || || |||| ||| |||| |||| | Sbjct 88507 GAAGAAAATGCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAACTCGCTTGGT- 88449 Query 13833 GTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGAT 13892 |||||| | ||||||||| | |||||| |||| | | || | || ||||| Sbjct 88448 -----CTATCCAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGAT 88394 Query 13893 TGCATTGAATAAATG-TTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAA 13949 |||||||| | | || ||| |||| || | ||| |||||| |||||||| || | Sbjct 88393 GGCATTGAAAAGGCGATTTCTT-TCTTGAGGATCCTT--AATGTAGGTATCAATGAGGAG 88337 Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009 ||| |||| || || || || |||| ||| ||||| || |||||||| || | || Sbjct 88336 TGAATAGGTTTCTGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGC 88277 Query 14010 TTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069 |||| | ||||| || | ||| ||||||| || ||||||||||||||||| || Sbjct 88276 CTCTGTATACTGTACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTC 88217 Query 14070 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14129 |||||||||||| || ||||||| || ||||||| | | || || || || | Sbjct 88216 ACTAGCTGCAAAGAAAGCCAATACGTGAGAGATAAAGTGTCGTTCATCGTTATTCAAGCG 88157 Query 14130 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14189 ||| || | || | | | || | || ||| | |||||||| ||||| | Sbjct 88156 GGCCCAGTCTTTGAGGTCTTGACTTAAGTCAATCTCCTCAGCGGTCCAAAAGCTAGCTTC 88097 Query 14190 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 ||||| ||||| | |||||| || | || | ||||| || | |||||||| Sbjct 88096 TGCTTTCTTATAAAAGTTCCATATATCATGATGTTCGATAGGGAATAATACAAATC 88041 >seq222 Length=228455 Score = 131 bits (144), Expect = 2e-25 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 |||||| ||||||| |||||| | || ||||| | ||| |||||||| || ||||| || Sbjct 135069 TAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAAAGT 135128 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 ||||||||||||||||||| ||||| ||||| || || | | || || ||| Sbjct 135129 CAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACTAAA 135188 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 |||||| || || || || ||||| |||| | ||||| |||| || |||| || Sbjct 135189 GAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAAGA---TTTTGAATT 135245 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 || |||||| | ||||| |||| ||| || || | | | |||||||| || || Sbjct 135246 TGTAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAATAGC 135305 Query 13896 ATTGAATA 13903 ||| |||| Sbjct 135306 ATTAAATA 135313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/301 (67%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 ||||| | || || || || ||||| || || || ||||||||||| ||||| | |||| Sbjct 135451 CTATAAGTCTCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCT 135510 Query 14011 TCTGACCATTGTACCTCCGAGTAA--AATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068 |||| ||| || || | | | ||| | || || ||||||||||| ||||| | Sbjct 135511 TCTGGAATTTGAACTTC--ACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGT 135568 Query 14069 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14128 |||| |||||||| || || | | | ||||| | | || | || ||| | || Sbjct 135569 CACTGGCTGCAAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTTTAATT 135628 Query 14129 TTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 | || |||||| | ||| || | |||||| | ||| || |||||||||| || Sbjct 135629 TATTCTCCCAATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAG 135688 Query 14186 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 | |||| || || || | |||| || || ||||| || || || | |||||||| Sbjct 135689 CTTCAGCATTCTTGTAATATGCCCAAATATCACTATATTTAATTGGGAATAATACAAATC 135748 Query 14246 T 14246 | Sbjct 135749 T 135749 >seq1819 Length=3716 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 13367 TTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 |||||||||| |||| || | ||| ||||| || || ||||| |||| ||| || || Sbjct 3444 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 3503 Query 13427 TTTCCATAAAATCGAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 13485 | ||||||||||| || ||| ||| || ||| | | | ||| | |||| ||||| Sbjct 3504 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 3562 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACAT 13523 | |||| || |||| |||||||||||| || ||||| Sbjct 3563 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACAT 3600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478542293133360