Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq982 116 3e-21 seq540 116 3e-21 seq322 113 3e-20 >seq982 Length=41121 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| | |||||||||| || |||||||| | ||||| ||||| Sbjct 2368 CCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAT 2427 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || || ||||| | || |||||||||| || Sbjct 2428 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGG 2487 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| ||||| | ||| ||||| | | || || Sbjct 2488 ATACCTTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 2547 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| ||||| | || || |||||||||||||| Sbjct 2548 TCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||||| ||| || ||||| | |||||||| || | ||||| Sbjct 1921 AGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGA 1980 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||||||||| || || ||||| | || |||||||||| || | ||||||| Sbjct 1981 CCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCT 2040 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || |||| ||||| | ||| ||||| | | || || |||| || Sbjct 2041 TTGTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTG 2100 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||| ||||| | || || |||||||||||||| Sbjct 2101 ATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| || |||||||| | ||||| ||||| || ||||| | || ||| Sbjct 2158 ACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 2217 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| |||||||| || | || ||||| |||| || | ||||||||| || | Sbjct 2218 AATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGG 2277 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| ||||| | | | ||||| | | ||||| || | || || ||||| Sbjct 2278 ATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGATTGTTTTA 2337 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| | || || ||||| |||||||| Sbjct 2338 CCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||||| ||| || ||||| | ||||| ||||| || ||||| Sbjct 2605 AGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGA 2664 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || |||||||| ||||| ||||| | || |||||||| | || | ||||||| Sbjct 2665 CCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCT 2724 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| ||||| | ||| ||||| | | || || || | || Sbjct 2725 TTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTG 2784 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATT 43119 || ||||| ||||| | || || |||||||||||||| | |||||| Sbjct 2785 ATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGT--TTAATT 2830 >seq540 Length=89862 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| || |||||||| | || ||||| || | ||||| | || ||| Sbjct 83839 ACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCC 83780 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| |||||||| || | || ||||| |||| || | ||||||||| || | Sbjct 83779 AATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGG 83720 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||||| | ||| ||||| | | || || |||| || ||||||||| Sbjct 83719 ATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTTT 83660 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 ||||||| ||| || ||||||||||||||||| Sbjct 83659 CCGGTTAAAGTCTTTACAAAAATTTGCATTTT 83628 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | || ||||| || | ||||| | || ||||||||||| ||||||||| Sbjct 84049 TCTTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAA 83990 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || |||||||||| || | ||||||||| || |||| ||||| | Sbjct 83989 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATCTTGGTCTTGACGTTT 83930 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| |||| || |||| || || ||||| ||||| | ||||| ||| Sbjct 83929 TCAATGGTGTCAGAGCCCTCAACTTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACA 83870 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 83869 AAAATTTGCAT 83859 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||| || | ||||| | || ||||||||||| ||||||||| Sbjct 84505 TCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAA 84446 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || |||||||||| || | ||||||||| || ||| ||||| | Sbjct 84445 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTT 84386 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| | | || || |||| || || ||||| ||||| | ||||| ||| Sbjct 84385 TCAATGGTGTCAGAACCTTCAACTTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACA 84326 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 84325 AAAATTTGCAT 84315 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||||| ||| |||||||| | || ||||| || | ||||| Sbjct 84304 AGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGG 84245 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||||||||| |||||||| || | || ||||| |||| || | ||||||| Sbjct 84244 CCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCT 84185 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| ||||| | ||| ||||| | | || || |||| || Sbjct 84184 TTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTG 84125 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||| ||||| | || || ||||| |||||||| Sbjct 84124 ATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 >seq322 Length=112280 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| | || ||||||| ||| || ||||| | ||||| ||||| Sbjct 11459 CCACCACGGAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAT 11400 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || |||||||| | || |||||||||| || Sbjct 11399 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGG 11340 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| ||| || | | | ||||| | | || || Sbjct 11339 ATACCTTCTTTGTCTTGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACT 11280 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || |||||||| ||||| | || || |||||||||||||| Sbjct 11279 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||||| ||| || ||||| | ||||| || || | ||||| Sbjct 12134 AGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGA 12075 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || |||||||| || || |||||||| | || |||||||||| || | |||||| Sbjct 12074 CCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 12015 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGT 43070 || || |||| ||||| | ||| ||||| ||||| | || |||| || Sbjct 12014 TTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAG-AGCCTTCAACTTCTAAGGT 11956 Query 43071 TATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||| ||||| | || || |||||||||||||| Sbjct 11955 AATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381333466898892