Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq915 190 5e-44 seq3751 165 2e-36 seq3699 152 1e-32 seq1335 93.3 1e-14 >seq915 Length=38681 Score = 190 bits (210), Expect = 5e-44 Identities = 396/587 (67%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 37390 CCAATTTCAGCAGGCGGCTGGTATTAGCGCCGGGCTTTCTGCGCGCTGGTATCCGCATAT 37449 |||||| | | || || ||||| || | | ||| | |||||||||||| |||||| Sbjct 37474 CCAATTCCGCCGCGCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATAT 37533 Query 37450 TACGGCGGCAATGAGCGAATTCGGTATTACTGCACCACTGGATCAGGCCATGTTCATTGC 37509 || |||||||||| || || || || ||| ||| | ||||| ||||| || || Sbjct 37534 CACCGCGGCAATGAAAGAGTTTGGCATCGAACAACCGCTGCACCAGGCGATGTTTATCGC 37593 Query 37510 ACAAGTTGGGCATGAATCTGCTGGTTTTACCTCGCTGGTCGAGAGCTTCAACTACTCGGT 37569 || || |||||||| ||| | || |||||| |||| || | |||||||||| || Sbjct 37594 GCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTACAGCGT 37653 Query 37570 AGATGGGCTGATGAAAACCTTTGGTAAA---CGCCTGACGCCGTATCAGTGTGAAATGCT 37626 || |||||| | | ||| ||||| || | | |||| | | ||| Sbjct 37654 AGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACTCAGGGTCAGGCTAACGCGCT 37713 Query 37627 GGGGCGTGTCGATGGT-AAGCA--------GGTGGCCCACCAGCCGCAAATAGCCAATCT 37677 ||| ||| | |||| || || | ||| | ||||| || ||||| || Sbjct 37714 GGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGCCAGCGTGCGATCGCCAACCT 37773 Query 37678 AGTTTACGGTGGCCGCATGGGTAACAAAGACGCCGGA--GATGGCTGGAAGTATCGCGGG 37735 || ||| | | ||||| ||||| | | | || || |||||| || | |||| Sbjct 37774 GGTGTACAGCAAAAGAATGGGGAACAACG--GTCCGACTGACGGCTGGTTTTACCTCGGG 37831 Query 37736 CGTGGGCTTATCCAGATTACCGGGCTGGAGAATTACACCAGATGCGGCGTTGCCCTGAAA 37795 || |||||||||||||| ||||||||| | || || | |||||| || |||||| Sbjct 37832 CGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAG 37891 Query 37796 CTGGATCTGGTGGCGAATCCGGGACAGCTTGAACTGGATCGTCATGCCGCCCGTTCCGCA 37855 |||||||||| | | || | | ||| | | ||| | || ||||| ||| Sbjct 37892 GTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCG 37951 Query 37856 GCGTGGTTTTTTGTGACTAGAGGGTGTCTGAAATACTCCGGCGACCTGGTGCGCGTTACG 37915 |||||||| || | || | ||| || |||| ||| ||||||||||||||||||| ||| Sbjct 37952 GCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACG 38011 Query 37916 CAGATCATTAACGGAGGGCAGAACGGCATCGGTGACAGGCGAGAGCG 37962 |||||||| || || |||||||||||||||| ||| |||| | ||| Sbjct 38012 CAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGTGCGCG 38058 >seq3751 Length=10017 Score = 165 bits (182), Expect = 2e-36 Identities = 281/403 (70%), Gaps = 6/403 (1%) Strand=Plus/Minus Query 8778 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 8837 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 3356 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 3297 Query 8838 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 8895 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 3296 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 3239 Query 8896 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 8955 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 3238 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 3179 Query 8956 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 9015 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 3178 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 3120 Query 9016 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTGG 9074 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 3119 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 3060 Query 9075 AGCGTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 9134 |||| || | || ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 3059 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 3000 Query 9135 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177 | | || ||||| || |||| |||||||||||| ||||||| Sbjct 2999 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTA 2957 >seq3699 Length=658 Score = 152 bits (168), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 38077 CATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACC---GCCAGTCATAGT 38133 |||||||| || ||||||||| || ||| | ||||| || | ||||| | Sbjct 446 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA--- 502 Query 38134 CTGACGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCC 38193 |||| ||||||||||| | | || | || ||| || ||||||||||||| ||||| || Sbjct 503 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 562 Query 38194 CTTGATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGCGC 38253 || |||| || ||| || |||||| | ||| ||||||||||||| ||||||||| |||| Sbjct 563 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 622 Query 38254 GATGATGTCGCCGCTGGCCGTCGTCG 38279 |||| ||| |||||||| |||||||| Sbjct 623 GATGGTGTTGCCGCTGGTCGTCGTCG 648 >seq1335 Length=14169 Score = 93.3 bits (102), Expect = 1e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 28149 GTAGTTAGTGTTATCAGATATCACCAATAATTTATCGGGGATCATCTGCAGTCTTTTTAC 28208 |||| | |||||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 5721 GTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTAC 5662 Query 28209 GTATATTTTATCATCAAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGATGCT 28268 | | | || || | ||| ||||||| |||||||| ||||| || | | Sbjct 5661 ATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGT 5602 Query 28269 TATATCGACAAAAATAAGATCTCCGGGTTCAATTGTTGGTGCCATGCTGTCACCGCGCAC 28328 ||||| || || | ||||| || ||||| || ||| || |||||||||||||||||| Sbjct 5601 GATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCAC 5542 Query 28329 GTTAAT 28334 |||||| Sbjct 5541 GTTAAT 5536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128343350729268