Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq1335 111 4e-20 seq915 89.7 1e-13 seq2982 86.0 2e-12 >seq1335 Length=14169 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 5137 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 5196 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11410 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 11351 Query 5197 TTAC 5200 |||| Sbjct 11350 TTAC 11347 >seq915 Length=38681 Score = 89.7 bits (98), Expect = 1e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 7959 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGGGGTTGGCTTGCGGCGAT 8018 ||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||| Sbjct 9480 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGC-TGCGGCGAT 9422 Query 8019 AAAT 8022 | || Sbjct 9421 ATAT 9418 >seq2982 Length=1456 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130039194160908