Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq1686 125 1e-23 seq7039 120 5e-22 seq3307 116 7e-21 seq2454 105 1e-17 seq54 102 1e-16 seq2234 93.3 8e-14 seq385 89.7 9e-13 seq897 87.8 3e-12 >seq1686 Length=12041 Score = 125 bits (138), Expect = 1e-23 Identities = 83/92 (90%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 ||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| || Sbjct 10720 TTTTGAAATTGGCTCCGTGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTT 10661 Query 271792 GCTCTACCGACTGAGCTATCACGGAATTAAAT 271823 |||||||||||||||||||||||||| || || Sbjct 10660 GCTCTACCGACTGAGCTATCACGGAACTACAT 10629 Score = 105 bits (116), Expect = 1e-17 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 273264 ATTAAA-ATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCG 273322 |||||| |||||||| || ||| || |||||||||||||||||||||||||||||||||| Sbjct 11152 ATTAAATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCG 11093 Query 273323 CGCTACC-AACTGCGCTACACTCCG 273346 ||||||| ||||||||| || ||| Sbjct 11092 CGCTACCGGACTGCGCTATACCCCG 11068 Score = 100 bits (110), Expect = 5e-16 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || || || ||||||||| |||||||||||||||||||||||||||| Sbjct 10802 AATATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 10743 Query 273327 ACC-AACTGCGCTACACTCC-GTATTTAAATTGG 273358 ||| ||||||||| || || || || ||||||| Sbjct 10742 ACCGGACTGCGCTATACCCCGGTTTTGAAATTGG 10709 >seq7039 Length=691 Score = 120 bits (132), Expect = 5e-22 Identities = 74/79 (94%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||||| |||||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct 429 ATGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAAC 370 Query 272931 CAACTGAGCTATAGGCCCT 272949 ||||||||||||||||||| Sbjct 369 CAACTGAGCTATAGGCCCT 351 >seq3307 Length=6577 Score = 116 bits (128), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 |||| || ||||||| ||||||||||||||||||||||||| ||||||||||||| || Sbjct 1690 TTTACTATCTGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTT 1749 Query 271792 GCTCTACCGACTGAGCTATCACGGAAT 271818 |||||||| ||||||||||| |||||| Sbjct 1750 GCTCTACCAACTGAGCTATCGCGGAAT 1776 >seq2454 Length=2610 Score = 105 bits (116), Expect = 1e-17 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 273268 AAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTA 273327 |||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 2379 AAATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTA 2438 Query 273328 CC-AACTGCGCTACACTCCG 273346 || ||||||||| || ||| Sbjct 2439 CCGGACTGCGCTATACCCCG 2458 >seq54 Length=99412 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 272874 GTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCAA 272933 ||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 54631 GTGGGCCCACCAGGACTTGAACCTGGGACCACCTGATTATGAGTCAGGTGCTCTAACCAA 54690 Query 272934 CTGAGCTATAGGCCCT 272949 |||||||||||||||| Sbjct 54691 CTGAGCTATAGGCCCT 54706 >seq2234 Length=2923 Score = 93.3 bits (102), Expect = 8e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || || || ||||||||| |||||||||||||||||||||||||||| Sbjct 82 AATATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 23 Query 273327 ACC-AACTGCGCTACACTCCG 273346 ||| ||||||||| || ||| Sbjct 22 ACCGGACTGCGCTATACCCCG 2 >seq385 Length=624889 Score = 89.7 bits (98), Expect = 9e-13 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 273265 TTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCG 273324 || |||||||||||| || |||| ||||||||||||| ||| ||||||| ||| ||| Sbjct 544919 TTGAAATGGTCGGAGCGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCG 544978 Query 273325 CTACCA-ACTGCGCTACACTCCGTAT 273349 |||||| ||||||||| |||||||| Sbjct 544979 CTACCAGGCTGCGCTACGCTCCGTAT 545004 >seq897 Length=37995 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||| | ||||| ||||| | |||||||| ||||||| |||| |||||||| Sbjct 21735 ATGGTGGGCCCGGAGGGACTCGAACCCCCAACCAAGCGGTTATGAGCCGCCGGCTCTAAC 21794 Query 272931 CAACTGAGCTATAGGCCC 272948 ||| ||||||| |||||| Sbjct 21795 CAATTGAGCTACAGGCCC 21812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896853639777760