Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq2503 109 4e-19 seq82 102 6e-17 seq1286 91.5 1e-13 >seq2503 Length=4936 Score = 109 bits (120), Expect = 4e-19 Identities = 232/338 (69%), Gaps = 19/338 (6%) Strand=Plus/Plus Query 99229 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGCG--CTGCGCGCCCCCACTGGCAGAAAT 99285 ||||||||||||||||| || | ||||| ||| ||| | ||| |||| | Sbjct 101 TCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTG---GTGCCCGGCGGCATGTAG 157 Query 99286 AACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 99345 | | |||||| |||| ||||||||||| ||||||| ||| | ||| |||| | Sbjct 158 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 217 Query 99346 TCGGTGAGG---GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGG 99402 ||| | | ||| | ||| |||| || || | || | |||| |||||| ||| Sbjct 218 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 274 Query 99403 CCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCA 99462 || || | ||| ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 275 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 334 Query 99463 CGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCA 99520 ||||||||||| ||||| ||| | || ||| | || ||| |||||| | | || Sbjct 335 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCA 389 Query 99521 TCATGAGATCAGCGAGTTCATCCACCACTACCACGATG 99558 |||| | || || | ||| || ||||| ||||||||| Sbjct 390 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 427 >seq82 Length=463168 Score = 102 bits (112), Expect = 6e-17 Identities = 225/331 (68%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 99582 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 99638 || ||||||||| ||| ||||| ||||| ||||| |||||||| ||||| Sbjct 196052 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 195996 Query 99639 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 99698 ||| ||||| | || |||| | | || || || |||||| ||| || || || Sbjct 195995 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 195936 Query 99699 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 99757 || |||| || | || || | ||| || || ||||||||||| || | | Sbjct 195935 AATGCCGTCATAGATCGACAGTTCCAG-CATCTTCGGATCGATCATGATCAGGCGGCACT 195877 Query 99758 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 99817 | || |||||| ||||| |||||||| | | ||| | ||||||| ||| || | Sbjct 195876 GTTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTAC 195817 Query 99818 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA-GATG 99876 |||| ||||| | || || |||||||||||||||||||| |||| | || | || || Sbjct 195816 CCGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTTCGCCA-GATCGGCGATGACC 195758 Query 99877 TCCTTGCCCTCGACGTCCTTGCCCACTGCCA 99907 ||| ||| | || | |||||||| |||| Sbjct 195757 GCCTCGCCATTGATGGTCTTGCCCAGCGCCA 195727 >seq1286 Length=49315 Score = 91.5 bits (100), Expect = 1e-13 Identities = 202/294 (69%), Gaps = 13/294 (4%) Strand=Plus/Plus Query 99585 GCGCACGCC-AGCCTCCTG-CATCTGCCGGTATCGGTCGTCCATCTC---TACGGTGAGC 99639 ||||||||| ||| | || ||||| |||||| ||||| ||||| || ||| | | Sbjct 14218 GCGCACGCCCAGCTT--TGACATCTTCCGGTAACGGTCTTCCATTTCGCGTACCGC---C 14272 Query 99640 CACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGG 99699 ||| ||||| | ||||||| | | || || || || || || ||||| || Sbjct 14273 CACTTCAGCGCCATGACCGCCTTTTTCGGGTCGGTCACAACAGGGGTAAGCAGGTGCGGA 14332 Query 99700 ATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGTTTGACCCGA 99759 ||||||| || | || || | ||||||||||| |||||| || | | Sbjct 14333 ATACCGTCATAGATCGACAGTTCTAGCATTTTGGGGTCGACCATGATCAGGCGGCACTCT 14392 Query 99760 TCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGAT-GAAGCTGGACTTGCC 99818 || || ||| |||||| ||||| || | | ||| | |||||| | | | |||||||| Sbjct 14393 TCCGGCGTCAGCCGGTAAAGCAGTGACAGGATCATGGTGTTGATCGCAAC-CGACTTGCC 14451 Query 99819 CGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA 99872 ||| || || | || || |||||||||||||||||||| || | |||||| || Sbjct 14452 CGAACCCGTTGTACCGGCAACCAGCAGATGCGGCATCTTGGCGA-GTTCAGCGA 14504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354609599108364