Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq1445 93.3 8e-15 seq7673 89.7 1e-13 >seq1445 Length=14432 Score = 93.3 bits (102), Expect = 8e-15 Identities = 267/402 (66%), Gaps = 13/402 (3%) Strand=Plus/Plus Query 336 CCCGACGTTCTCCGGCTTGCCGCCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAG 395 |||| |||||| |||| | |||||||||||| || ||||| ||| | ||||| Sbjct 11908 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 11966 Query 396 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTTGCCACTTCACTGAG 455 || | |||| |||||||| || |||||||| | || || || || | Sbjct 11967 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 12026 Query 456 CGGGATAATTTTGATGCCGTCGGCTTTCC--CCTGTGGG-GCATAGAGAAACAGATTTTT 512 |||||| | | |||||||| |||| |||| || || || | |||||| || Sbjct 12027 CGGGATGAGCTGAATGCCGTC---TTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCG 12083 Query 513 AAAGTTGTTGCGGCCTTTCGACTTCACCA-TGTTTTCGCGGAGCATTTCGATATCGTTGC 571 ||||||| | |||||||| ||| || || | ||| || ||||| || | Sbjct 12084 AAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTT 12142 Query 572 GATCCTGCACGGCATCAGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAAT 631 | |||| | || || || | ||||| || | |||||||| |||||| | ||| | Sbjct 12143 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGT 12202 Query 632 ACTTGCGGCGGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTG--AG 689 ||||||| |||||||||||||| ||| || ||| || || |||||| || Sbjct 12203 ACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAG 12260 Query 690 ATATTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTC 731 | |||||||||||||| | ||||| || ||||| | ||| Sbjct 12261 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTC 12302 >seq7673 Length=393 Score = 89.7 bits (98), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 12378 GAAAAAGGTTTTACT-CAGTTAAGCAGTGCAACAAACAGCACCAGTGAAAAGCTGGCGGC 12436 |||||||| || | ||| | |||||||| || |||||||| || |||||||| Sbjct 161 GAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGCACTTCCGAGTCACTGGCGGC 102 Query 12437 AACGCCAAAAGCGGTCAAGGCAGCAAATGACAACGCAAATTCACGTCTGGCGAAAAATCA 12496 ||||||||| || || || ||||| ||||||| ||| | ||||||| |||| | || Sbjct 101 AACGCCAAAGGCAGTAAAAGCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCA 42 Query 12497 GAACGGTGCAGATATCCAGGATAA 12520 |||||| || ||||| | ||||| Sbjct 41 GAACGGCGCTGATATACCCGATAA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98198933805720