Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq1445 111 3e-20 >seq1445 Length=14432 Score = 111 bits (122), Expect = 3e-20 Identities = 289/432 (67%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 335 CCCGACGTTCTCCGGCTTGCCGCCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAG 394 |||| |||||| |||| | |||||||||||| || ||||| ||| | ||||| Sbjct 11908 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 11966 Query 395 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTTGCGACTTCACTGAG 454 || | |||| |||||||| || |||||||| | || || || || | Sbjct 11967 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 12026 Query 455 CGGGATAATTTTAATGCCGTCGGCTTTCC--CCTGTGGG-GCATAGAGAAACAGATTTTT 511 |||||| | | ||||||||| |||| |||| || || || | |||||| || Sbjct 12027 CGGGATGAGCTGAATGCCGTC---TTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCG 12083 Query 512 AAAGTTGTTGCGGCCTTTCGACTTCACCA-TGTTTTCGCGAAGCATTTCGATATCGTTGC 570 ||||||| | |||||||| ||| || || | ||| || ||||| || | Sbjct 12084 AAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTT 12142 Query 571 GATCCTGCACGGCATCGGTAACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAAT 630 | |||| | || ||||| | ||||| ||| | |||||||| |||||| | ||| | Sbjct 12143 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGT 12202 Query 631 ACTTGCGGCGGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTG--AG 688 ||||||| |||||||||||||| ||| || ||| || || |||||| || Sbjct 12203 ACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAG 12260 Query 689 ATATTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACACGGA 748 | |||||||||||||| | ||||| || ||||| | ||| ||| ||| | | || Sbjct 12261 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGA 12320 Query 749 GCCGGGCGCGAA 760 ||||| || || Sbjct 12321 ACCGGGGGCAAA 12332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104457555979848