Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq540 105 5e-18 seq982 96.9 2e-15 seq322 91.5 1e-13 >seq540 Length=89862 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| | |||||||| || || || ||||| || |||||||| Sbjct 83858 ACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGA 83799 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| ||||||||||| || ||||| || | | ||| ||||| | || Sbjct 83798 GAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGG 83739 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||||| ||||| | ||| || || | || || Sbjct 83738 GATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAAC 83679 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| |||||||||||||| ||||| |||||||| Sbjct 83678 TTCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCAT 83631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || ||||| || || |||||||| || |||||||| Sbjct 84086 ACCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGA 84027 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| ||||||||||| || ||||| || | | ||| || || | || Sbjct 84026 GAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGG 83967 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| || || ||||| | ||| || || | ||| || Sbjct 83966 GATACCTTCTTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAAC 83907 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||||| || || || ||||| |||||||| Sbjct 83906 TTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || ||||| || || || ||||| || |||||||| Sbjct 84314 ACCACCTCTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGA 84255 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| ||||||||||| || ||||| || | | ||| ||||| | || Sbjct 84254 GAGGGTACGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGG 84195 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||||| ||||| | ||| || || | || || Sbjct 84194 GATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAAC 84135 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||||||||| || ||||| ||||| |||||||| Sbjct 84134 TTCTAATGTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| | || | ||| || || |||||||| || || ||||| Sbjct 84542 ACCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGA 84483 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| ||||||||||| || ||||| || | | ||| || || | || Sbjct 84482 GAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGG 84423 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||||| ||||| | ||| || || | || || Sbjct 84422 GATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAAC 84363 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||||||||| || || || ||||| |||||||| Sbjct 84362 TTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 >seq982 Length=41121 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| | |||||||| || || || ||||| || || || ||| Sbjct 2139 ACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGA 2198 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| ||||||||||| || ||||| || | | ||| ||||| | || Sbjct 2199 TAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGG 2258 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| || || ||||| | | | || || | || || Sbjct 2259 GATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGAC 2318 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||||| || ||||| ||||| |||||||| Sbjct 2319 TTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || ||||| || || |||||||| || || || ||| Sbjct 2595 ACCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGA 2654 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || |||||||| || || || || | | ||| || || | || Sbjct 2655 TAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGG 2714 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||| || ||||| | ||| || || | || || Sbjct 2715 GATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAAC 2774 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 || | || |||||||||||||| || ||||| ||||| |||||||||| Sbjct 2775 TTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGT 2824 >seq322 Length=112280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| | |||||||| || || |||||||| || || || || Sbjct 11916 ACCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGA 11857 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || ||||| || | | ||| || || | || Sbjct 11856 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGG 11797 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||||| ||||| | ||| ||||| | || || Sbjct 11796 GATACCTTCTTTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTAC 11737 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||||| || ||||| ||||| |||||||| Sbjct 11736 TTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| || | | || ||||| || || |||||||| || || || || Sbjct 11232 ACCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGA 11173 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || |||||||| || ||||| || | | ||| ||||| | || Sbjct 11172 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGG 11113 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||||| ||||| | ||| ||||| | || || Sbjct 11112 GATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAAC 11053 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 11052 TTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| || || |||||||| || || || ||| ||| ||| |||| ||| Sbjct 11441 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCC 11382 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || | | ||| || || | || | ||||||||| ||| Sbjct 11381 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 11322 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | | | || || | || || || | ||||| |||||| Sbjct 11321 ATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGTAATAGTTTTA 11262 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||| ||||| |||||||| Sbjct 11261 CCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354743986374552