Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq385 107 2e-18 seq3517 89.7 6e-13 >seq385 Length=624889 Score = 107 bits (118), Expect = 2e-18 Identities = 151/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 || ||||||| ||| ||||| || | || |||||||| || ||||||| || Sbjct 494918 TCGCCCGGCTGCAGCAGTGCCAGGAATACGGCCTGGTTCATCTGGCTGCCGGAATTCGGC 494977 Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT-- 7103 || || || || | | ||| | ||||||| ||| || ||||| || ||||| |||| Sbjct 494978 TGCACATTAGCATATTCGCAGTTGAACAGTTTTTTGGCGCGCTCGATGGCCAG-TTCTTC 495036 Query 7104 --CGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGC 7161 |||| |||| | ||||||||||||||| || ||||||||||| ||||| || Sbjct 495037 CGCGAT---ATCGACAAACTGGCAGCCGCCATAATAGCGCTTGCCCGGATAGCCCTCGGC 495093 Query 7162 ATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 ||| |||||||| | || || |||||||| Sbjct 495094 ATATTTGTTGGTCATGATCGAGCCCTGTGC 495123 >seq3517 Length=1858 Score = 89.7 bits (98), Expect = 6e-13 Identities = 180/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 6907 GTATATCTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAA 6966 ||| | ||||||||| | | ||||| ||||| || || ||||||||| | ||| Sbjct 88 GTACAGCTTGCCCGAGGACGACACTTTGGCGCCGTGGGTCAGGTGGCCGCCGTGGGCCAG 147 Query 6967 GGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGC 7026 | ||| |||| | | || || | |||| || || |||| || || ||| || Sbjct 148 GCTCATGCCGAGGATGGTGTCGCCGGCGTTCAACAGCGCCAGGTACACCGCACTGTTGGC 207 Query 7027 TTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACG 7086 |||||||| || || || ||||| ||| ||| | || ||||| | || ||||| Sbjct 208 GGACGAACCGGAGTGCGGCTGCACGTTGGCGTAATCGGCACCGAACAGCTGCTTGGCACG 267 Query 7087 CTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCC 7146 ||| || || || |||| | || | | |||||||||| || || || ||||| Sbjct 268 CTCGATGGCGAGCACTTCGACCTTGTCCACGTGCTCGCAGCCGCCGTAGTAACGCTTGCC 327 Query 7147 CGGATATCCCTCAGCATACTTGTTGGT 7173 ||| || || || || ||||||||||| Sbjct 328 CGGGTAACCTTCGGCGTACTTGTTGGT 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555309232581040