Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq54 280 1e-70 seq3596 122 7e-23 seq222 113 4e-20 seq1819 82.4 7e-11 >seq54 Length=99412 Score = 280 bits (310), Expect = 1e-70 Identities = 586/860 (68%), Gaps = 25/860 (3%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| ||||| | || | ||||||||| || || ||||| |||| || || || | Sbjct 88915 TTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGTAGGGAGATCAT 88856 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA---CACCCTAATTCTAG 12975 |||||||| ||||| ||||| || || | |||| ||| ||||||||||| || Sbjct 88855 CTCCATAAAGTCGAATGGATTGGTC--ACGTT-GTATACCTTAGAACACCCTAATTCAAG 88799 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 ||| || | ||||| |||||||| |||||||||||||| || || ||||| || || Sbjct 88798 TAATAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTCATGCCAAT 88739 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | || ||||| | || || || | ||| | | ||| || | ||||| ||| ||| Sbjct 88738 GAGCTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCATCGGTAAT 88679 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGG---ATTTGATAGATGCTT---AAACATCAT 13149 || ||| ||| | || ||| |||| | |||| || ||||| | ||| | Sbjct 88678 AATTTCTTTTAC--CCTT-TCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATACAATAG 88622 Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 || ||||| ||||| ||||||||||| || ||| || || ||||| || || | || Sbjct 88621 GCAAGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAG 88562 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA-ACCCGaaaaaa 13268 ||| ||||| | || | |||||| | ||| || || | |||||| | ||| || || | Sbjct 88561 ACCGGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCG-AGCAAAAGCTACCAGAGAAGA 88503 Query 13269 aTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT 13328 | || ||||| || |||||||| || || | |||||| || | ||| || | Sbjct 88502 AAATGCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAA---ACTCGCTTGG---T 88449 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 ||||||| | ||||| | |||||||| ||||| |||| | | || || || | Sbjct 88448 CTATCCAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCAT 88389 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 | || | |||| |||| | | || ||| || ||||| || | | ||| Sbjct 88388 TGAAAAGGCGATTTCTTTCTTGAGGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGG 88329 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG-AT 13507 |||||||||| ||||| || | || || ||||| |||||||| || | ||||||| || Sbjct 88328 TTTCTGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGCCTCTGTAT 88269 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 || || ||||| | ||| |||||||||| ||||| ||||| || ||||||||||| Sbjct 88268 AC-TGTACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTCACTAGCT 88210 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAA 13627 ||||| ||||| | || ||| ||||| | | ||| | | ||| ||| Sbjct 88209 GCAAAGAAAGCCAATACGTGAGAGATAAAGTGTCGTTCATCGTTATTCAAGCGGGCCCAG 88150 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 ||| | |||| ||| || | ||||||| |||||||||| ||| | || ||| Sbjct 88149 TCTTTGAGGTCTTGACTTAAGTCAATCTCCTCAGCGGTCCAAAAGCTAGCTTCTGCTTTC 88090 Query 13688 TTATACATCATCCATATATC 13707 ||||| | |||||||||| Sbjct 88089 TTATAAAAGTTCCATATATC 88070 >seq3596 Length=2072 Score = 122 bits (134), Expect = 7e-23 Identities = 291/438 (66%), Gaps = 8/438 (2%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| ||||| |||| || |||||||| || | ||| || ||| ||||| Sbjct 37 CAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGC 96 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaa-aa 13269 || ||||| || |||| |||||| | ||| || || | | || | | |||| || || Sbjct 97 CCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAA 155 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 || ||||| ||||| || || || | ||| | ||| || | |||| | ||| Sbjct 156 AATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTC 209 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| ||||| | |||||||| || || || | | |||| || | Sbjct 210 AATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATG 269 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 || | | |||||| | | ||| |||||| ||||| |||| | ||| | Sbjct 270 GAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGT 329 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 ||| || || || ||||||||| || ||||| ||||||||||| | || || | | Sbjct 330 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAG 389 Query 13510 CTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 ||| |||||| || | |||| | |||||| || || || |||||||| ||||| Sbjct 390 CTGTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGC 449 Query 13570 aaaaaaaGCAAGTATGTG 13587 ||||||||||||||| || Sbjct 450 AAAAAAAGCAAGTATATG 467 >seq222 Length=228455 Score = 113 bits (124), Expect = 4e-20 Identities = 228/331 (69%), Gaps = 13/331 (4%) Strand=Plus/Plus Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||||| | || |||||||||||||| || || ||||| |||||||| ||||| | ||| Sbjct 135451 CTATAAGTCTCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCT 135510 Query 13502 TCTGATACCTGAACTTCGGAGTAA--AATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 |||| | |||||||| | | | ||| | ||||| ||||| ||||| || |||| Sbjct 135511 TCTGGAATTTGAACTTC--ACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGT 135568 Query 13560 CACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACT 13619 |||| || ||||| ||||| || | || ||||| | | |||| || || | | | Sbjct 135569 CACTGGCTGCAAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATC-GTTTAAT 135627 Query 13620 TTA----ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAA 13675 ||| |||||| | ||| |||| | ||| | ||||| | |||||||| ||| Sbjct 135628 TTATTCTCCCAATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAA 135687 Query 13676 GCAACAGCCTTCTTATACATCAT--CCATATATCCTTATAAACAATGGGAAACACAACGT 13733 || |||| ||||| || || || ||| ||||| |||| ||| || || | || Sbjct 135688 GCTTCAGCATTCTTGTA-AT-ATGCCCAAATATCACTATATTTAATTGGGAATAATACAA 135745 Query 13734 ATCTTCCAGTTGTCTGTCTTAAAATCGGTTC 13764 |||| | | ||| | ||||||| ||||| Sbjct 135746 ATCTATCTTTATTCTCTTTTAAAATTGGTTC 135776 >seq1819 Length=3716 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 |||||||||| || | || | ||| ||||| || || ||||| |||| | || || Sbjct 3444 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 3503 Query 12918 TTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTT-TTACACCCTAATTCTAGT 12976 | ||||||||||| || ||||| | | | ||| |||||| || | || | ||| | Sbjct 3504 TCTCCATAAAATCAAACGGATTGGTGGCATGATA-TATTTTGGTATAACCCAGTTCCTGC 3562 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | | ||||||| ||||||||||| || |||||| ||| | | ||||| || || Sbjct 3563 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 3622 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCG 13090 | || |||| || ||||| | ||| | ||||| || || || || ||| Sbjct 3623 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCG 3676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430941566303148