Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq1445 134 3e-27 >seq1445 Length=14432 Score = 134 bits (148), Expect = 3e-27 Identities = 241/345 (70%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 433 AAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTTATGCCGTCCGGTTTCCCG 492 || || ||||| | || |||||||||| || | || | |||||||| || || Sbjct 11998 AATTCGTCCTTGGCCGCAACCTCGCTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCT 12057 Query 493 TTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTAGAATTACGCATTGCA 552 ||| | ||| | ||||||||| ||||||||| ||||||| || || || ||| Sbjct 12058 GCCGGCGCGTACACAAACAGGTTGCGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCG 12117 Query 553 TCGCGCAGCGATTCGACGTCAGTCGCGCTT-TGCGCCGGGTCAGTCACATACATGATGTA 611 |||||| || |||| ||| || ||| ||||||| ||| |||| |||| ||| | Sbjct 12118 GTGCGCAGTGAGTCGATGTCC-TCTTCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAA 12176 Query 612 ACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGCGGATTCATTCAG 671 ||| || || |||||| | ||| |||||||| ||||||||||| ||| || || || Sbjct 12177 ACCGGCATGGCTGCCGTTGTTGTAGTACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAG 12236 Query 672 CCACGCAGAATTAAGC-GCGCTG--AGATATTCAGGCAGGCCGTAAATCTCCTGATTAAT 728 | || | || || |||||| || | || ||||||||||| || ||||| || || Sbjct 12237 CAGTGC-GCTTT--GCAGCGCTGCCAGCCACTCCGGCAGGCCGTAGATTTCCTGGTTGAT 12293 Query 729 ATCAGGCTCCAGCAGGTGGAACACGGTATCGGGTGCGAACTCATG 773 ||| | ||| ||| |||| | | | | |||| || || ||||| Sbjct 12294 ATCGGCCTCGCGCAAGTGGCAGATCGAACCGGGGGCAAATTCATG 12338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97904560983624