Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq3699 176 1e-39 seq140 141 2e-29 seq1335 122 2e-23 seq3795 105 2e-18 seq3178 102 2e-17 seq1500 95.1 3e-15 seq1617 91.5 4e-14 >seq3699 Length=658 Score = 176 bits (194), Expect = 1e-39 Identities = 202/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 37243 ATGAGCAGAGTCACCGCAATTATCTCCGCTCTGGTTATTTGCATCATCGTCTGCCTGTCA 37302 |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 37303 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA--- 37359 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 37360 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGGCAACATGAT 37401 |||| | | | | || |||| ||||||| ||| || | |||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 37402 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37460 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 37461 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37491 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq140 Length=20869 Score = 141 bits (156), Expect = 2e-29 Identities = 337/499 (68%), Gaps = 14/499 (3%) Strand=Plus/Plus Query 33053 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 33112 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 20004 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20063 Query 33113 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGC 33172 ||||| || ||||| | ||| || | ||| ||| ||||| | | || | | | | Sbjct 20064 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 20123 Query 33173 CTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCAC 33230 | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| ||||| Sbjct 20124 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCAC 20181 Query 33231 GGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGT-CCGGCGAGAAC-GA 33288 | || | ||||| ||| || | | | || || || |||| | || Sbjct 20182 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 20239 Query 33289 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 33348 || | |||||| | | | || || || || | || || || || || ||| Sbjct 20240 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 20299 Query 33349 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 33408 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 20300 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 20359 Query 33409 GGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 33467 |||||||| | |||| | || | || ||| |||||| |||| | || ||| | Sbjct 20360 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 20418 Query 33468 ACCGGTGAGT--CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGC 33525 || | || | ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 20419 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 20476 Query 33526 AAGCCAGCGTCCCATCTGG 33544 | | | || | |||| || Sbjct 20477 ACGGTAACGGCTCATCGGG 20495 >seq1335 Length=14169 Score = 122 bits (134), Expect = 2e-23 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18426 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 18485 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11414 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 11355 Query 18486 TTGGTTACGTCT 18497 |||||||||||| Sbjct 11354 TTGGTTACGTCT 11343 Score = 122 bits (134), Expect = 2e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 16788 ACCTTCTCATCAAGCCAATCCGCCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 16847 || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 13075 ACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 13016 Query 16848 TGAGCATGGTTGTAAAT 16864 ||||| ||||||||||| Sbjct 13015 TGAGCGTGGTTGTAAAT 12999 Score = 96.9 bits (106), Expect = 9e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 18798 ATCATCTCCATAAAATAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 18857 ||||||||||||||| ||||| |||||||||||||||||||||||||||||| || | | Sbjct 11224 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 11165 Query 18858 GCGAGGAT 18865 |||||||| Sbjct 11164 GCGAGGAT 11157 >seq3795 Length=1936 Score = 105 bits (116), Expect = 2e-18 Identities = 244/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 33040 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 33099 |||||| | | || ||||| || ||||| || | || | ||| ||||| || Sbjct 1514 GTAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGA 1573 Query 33100 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 33159 ||||||||||||||| || || || ||||| |||||| |||| |||| ||||| | Sbjct 1574 GTTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCG 1633 Query 33160 CTGCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCC 33219 |||||||||| | | ||| || || || |||||||||||| || ||| || || || Sbjct 1634 CTGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCA-CCTGCT 1692 Query 33220 G-GGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCG 33278 | ||||| || || || | ||||| || || || || || ||| | |||| Sbjct 1693 GTGGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCG 1752 Query 33279 GCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGA 33338 || || | |||||||| | | | | | |||| || || || ||||| | Sbjct 1753 GCTTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCA 1812 Query 33339 GGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATT 33396 |||| |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || Sbjct 1813 GGTAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTT 1870 Query 33397 TGG 33399 || Sbjct 1871 CGG 1873 >seq3178 Length=10189 Score = 102 bits (112), Expect = 2e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 38324 ACTTTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGGAGAGAGTGCCTGTGCA 38383 || ||||| || ||||| ||| || || |||||||||||||| ||||| || || || Sbjct 5817 ACCTTCTGTGTCCTGGTCCTGCGCAACGGTTTCACCGTCACCGGTGAGAGCGCATGCGCC 5876 Query 38384 AGCCCGGAAAACTTTGATGCAGAAATTGGCCGGAAGATTGCCCGGCAAAATGCTGTAAAC 38443 || ||||| ||||| || || ||| | ||||| ||||||||||| || || || | | | Sbjct 5877 AGTCCGGAGAACTTCGACGCCGAAGTGGGCCGCAAGATTGCCCGCCAGAACGCCGAACAG 5936 Query 38444 AAAATCTGGATGCTCGAAGGTTACTTGCTGAAGCAG 38479 || |||||| ||| || ||| ||| |||||| Sbjct 5937 AAGATCTGGCCGCTGATGGGCTACGCGCTCAAGCAG 5972 >seq1500 Length=48209 Score = 95.1 bits (104), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 21675 TAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATT 21734 || |||| | ||| || ||||||||||| | || | ||| || || || ||| || Sbjct 46649 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 46708 Query 21735 ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGT 21794 |||||||||||||| |||||||||||| ||| || || || || |||||||| | Sbjct 46709 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 46768 Query 21795 TCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATATCTGATTTC 21853 ||||| || || || |||||||| | || || || | ||| || || | || ||| Sbjct 46769 TCTGATGTGGCCACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTC 46827 Query 21854 TGGATCATGCCCAAGGCGACCAATAATGATCACCTTATT 21892 ||||||| || || || || | | ||| ||||| || Sbjct 46828 CGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTT 46866 >seq1617 Length=5386 Score = 91.5 bits (100), Expect = 4e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 21666 CCTTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTC 21725 ||||| | || |||| | ||| || ||||||||||||| || | ||| || || || Sbjct 4745 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 4804 Query 21726 CCGCTCATTACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCA 21785 ||| || |||||||| ||||| || ||||||||| ||| || || || || ||| Sbjct 4805 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 4864 Query 21786 CGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATA 21844 ||||| ||| ||||| || || |||||||| | || || || | ||| || || Sbjct 4865 CGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTA 4923 Query 21845 TCTGATTTCTGGATCATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCC 21898 | || ||| ||||| | || ||||| || | | || ||||| || | ||| Sbjct 4924 ACGGACTTCCGGATCTTTTCCCAGGCGTCCTACGAGAATGACCTTGTTAATGCC 4977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124804477454940