Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq3699 796 0.0 seq1335 601 9e-168 seq2982 86.0 2e-12 >seq3699 Length=658 Score = 796 bits (882), Expect = 0.0 Identities = 549/621 (88%), Gaps = 0/621 (0%) Strand=Plus/Plus Query 21563 CATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATGGCCACACCGGAAAAGACATCA 21622 |||| || || | || ||||| | |||||| ||| | || || || ||||||||||||| Sbjct 1 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 60 Query 21623 TGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTATCA 21682 ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 61 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 120 Query 21683 CTGTCGCCAGACAAATTAACCCGTACATCAAAGTAGATATACCGGAAACAACGCGCGGCG 21742 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 121 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 180 Query 21743 CTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAATTTCAGAACATCGACGCTTCTTC 21802 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 181 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 240 Query 21803 GCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGATCAGCTACGTCGCTGGACATACG 21862 ||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 241 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 300 Query 21863 CTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTGAGGTTGAGCGTGATGTCTGTT 21922 |||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||| Sbjct 301 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 360 Query 21923 TGTGGGGTAAGCAATGAGCAGATTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCAT 21982 |||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||| Sbjct 361 TGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 420 Query 21983 CGTCTGCCTGTCATGGGCTGTTAATCATTATCGTGATAACGCCATCACCTACAAAGTCCA 22042 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| Sbjct 421 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCA 480 Query 22043 GCGCGACACTGTTACTCAAAAGCTGGCGCTGGCGAACGCGACAATTACCGATATGCAAAC 22102 |||||||| | | | | ||| ||||||||||||| ||||||| || ||||| | Sbjct 481 GCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGAT 540 Query 22103 GCGCCAGCGTGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAA 22162 ||||||||||||||| || | ||| || | | |||||| |||||| | ||| ||||||| Sbjct 541 GCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAA 600 Query 22163 AGCTGAGAATGATGCTCTTCG 22183 |||||| ||||||||||| || Sbjct 601 AGCTGAAAATGATGCTCTGCG 621 >seq1335 Length=14169 Score = 601 bits (666), Expect = 9e-168 Identities = 738/999 (74%), Gaps = 9/999 (1%) Strand=Plus/Minus Query 13483 GCTGGCTAACCGTGCTTCCTATAGGTCTGCGGCATGCTTCCAATTACCTTTCCAAAGACA 13542 |||| || ||||| |||||||| ||||||||||| || ||||| ||||| || || | Sbjct 5825 GCTGATTATCCGTGTTTCCTATACGTCTGCGGCATACTGCCAATAACCTTCCCGAAAATG 5766 Query 13543 AAAACCCTATTCATTTCATCTCTTTCAATTGGGTCCCAAGCTGAATAACTCTTATTATCA 13602 || |||| ||||| || ||| | || || |||||||| | ||| || ||||| |||||| Sbjct 5765 AACACCCGGTTCATCTCGTCTTTCTCGATCGGGTCCCACGGTGAGTAGCTCTTGTTATCA 5706 Query 13603 GATATGACCAATAGTTTATCTTTCATCTTCTGGAGCCGCTTAACATGTGCAGTATCGTCA 13662 || || |||| ||| |||||||||||| | || || ||||| ||||| || || ||||| Sbjct 5705 GAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTACATGGGCTGTGTCGTCG 5646 Query 13663 TAGAGGAAGGCGTATATCCCATCCCCATCGAAGTTTTTGATGCTTACGTCTACAAACAAC 13722 || || || || || || ||||| || ||||| ||| | | | || || |||| | Sbjct 5645 TACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGTGATATCAACGAACAGC 5586 Query 13723 AGATCTCCTGGTTCAATAGTTCCTGACATGCTATCTCCGCGCACATTTATGATGCGGATA 13782 ||||| |||||||| || |||||||||||||| || |||||||| || |||||||||||| Sbjct 5585 AGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCACGTTAATGATGCGGATA 5526 Query 13783 TTTTCAGCCTTTCTACCATCGAACATGTGTCTGGCATCGTCCTGCGAATACTCAACCGAG 13842 ||||| ||||| || |||||||||||||| | |||||||| ||| |||||||||||| Sbjct 5525 TTTTCCGCCTTCCTGCCATCGAACATGTGACGAGCATCGTCAAACGAGTACTCAACCGAG 5466 Query 13843 CGGAGTATTTCCACGAATTCTCGATTGATAACGCCAGGACCCGCGCTAACTTCAAGATCT 13902 || || | |||||| || || || ||||| || || || || || || ||||| | ||| Sbjct 5465 CGTAGAACTTCCACAAACTCACGGTTGATGACACCCGGTCCGGCACTGACTTCTATATCA 5406 Query 13903 AGGATATCGATTTTAAATGTGTTTGAA--GATG-GAGATGCGTTTATCGGAGTAGTT--C 13957 || | || || || || |||||| | || || | | || | || | ||| | Sbjct 5405 AGAACGTCAATCTTGAAGTATTTTGAATGGCTGACAGCAG-GCTTCCCTGA-TTGTTGAC 5348 Query 13958 CATCTTTTTTCATAGGACCAATTCCGGTAGACAACCATTCCGAATTAACACCTAACGCGT 14017 | || ||| |||| || || || || | || | |||||| | |||||| || || | Sbjct 5347 CGTCATTTCTCATCGGGCCTATGCCTGATGAGAGCCATTCTGTTCGAACACCCAATGCAT 5288 Query 14018 TTGCTATTTCAACAATCTTTGTTGACCCACGAGCGTTTCCACTTGTCAAACGCCAGATCG 14077 | |||||||||||||| |||||||| || || ||||| || ||||||| | |||||| | Sbjct 5287 TAGCTATTTCAACAATTTTTGTTGAGCCGCGCGCGTTGCCGCTTGTCAGTCTCCAGATTG 5228 Query 14078 TTGGCTGAGCAACGCCTGACGCTTTAGCGAGAGCACCTTGAGACATACCAGCCAGTTCCA 14137 | || ||||| ||||| ||||| || || ||||| ||||||||||| |||| |||||| Sbjct 5227 TGGGTTGAGCTACGCCAGACGCCTTTGCAAGAGCGCCTTGAGACATTCCAGATTGTTCCA 5168 Query 14138 TTGCCTTGTTGAGACGGTCAGAGAGAGTTTCTTTTTTCATAATATTCAATTTATACGCTT 14197 | || ||| | || |||| ||||||||||||||||||| || ||||||||||||| Sbjct 5167 TCGCTAGGTTTAAGCGATCAGCAAGAGTTTCTTTTTTCATAAGTTTTAATTTATACGCTT 5108 Query 14198 GCGTATTAATGGTCAAAACACGTTTTGCTATTGCTTTGATTAATACTCATTGCTATTATT 14257 ||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 5107 GCGTATTGATGGTCAAAACACGTTTTGCTATTGCTTGGGTTAATACGCATTGCTATTATT 5048 Query 14258 TGTTGTGTGTTATACGAAAGGGAATAAGCAATGACTAACAAAGCAATACAAAAAGCTGTT 14317 || || |||| || ||||| |||||| || || | || ||| || | Sbjct 5047 CATTCATTGCAATACCAATAGGAATTGATAATGACAAATCAAACCATTCAACTCGCAATC 4988 Query 14318 GCCATTGCAGGAAGCCAGCAAAAACTCGCCTCTTTGTGTGGAGTTAAGCAGCCAACTGTA 14377 ||| |||| || || || ||| || | | || || || || || || || Sbjct 4987 AGTATTACAGGTAGTCAAAAACGACTGGCAGATCTATGCGGTGTAGCCCAACCCACAGTT 4928 Query 14378 TGGCGTTGGTTACATGGTGGCGGCATTGACGCTAAGTATGTGGCAGCAATCGTAAAAGCT 14437 ||||||||| |||| |||||||| ||||| || ||||| ||| || ||| Sbjct 4927 TGGCGTTGGCTACACGGTGGCGGAATTGATGCCCGCTATGTAATGAAAATTGTCTCAGCC 4868 Query 14438 ACAGGAGGAAGAATTAAAGCCAG-AGAACTTCGTCCTGA 14475 || || |||| |||||| |||| ||| ||||||| || Sbjct 4867 ACTGGTGGAAAGATTAAA-CCAGCAGATATTCGTCCCGA 4830 Score = 102 bits (112), Expect = 2e-17 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 4641 CTCCATAAAACAAAACTCGCCGTAGCGAGCTCAGATAAAAGAAATCCCCGCGAGTGCGAG 4700 |||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||| Sbjct 11219 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11160 Query 4701 GATTGTTATTCATTGCCGATATTCATCTTT 4730 || || | |||||||| | ||| || |||| Sbjct 11159 GA-TGCTGTTCATTGCTGCTATACA-CTTT 11132 >seq2982 Length=1456 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132317383827564