Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq2614 378 2e-100 seq1603 105 2e-18 seq2008 100 9e-17 seq955 86.0 2e-12 >seq2614 Length=3964 Score = 378 bits (418), Expect = 2e-100 Identities = 461/625 (74%), Gaps = 3/625 (0%) Strand=Plus/Plus Query 44158 GCCTGAATATTTATGCTTGCGCCGCACGCCTGCGCGTATTTGTTTAGCGTCTTCATGCTG 44217 || |||||||| ||| |||| || || ||||| || ||| | ||| || ||||| ||| Sbjct 204 GCGTGAATATTGATGGTTGCACCACAGGCCTGAGCATATCTTGTTAAAGTTTTCATACTG 263 Query 44218 GCACCCAGCGGGTTGCCTTCCAGGCGGCTAATTGCGGACGGT-GTAATCCCCATACGTTC 44276 || || | || || | |||||| || || || || ||||| |||||||| || ||||| Sbjct 264 GCTCCTAAAGGATTACTTTCCAGCCGACTGATGGCTGACGGGCGTAATCCC-ATTCGTTC 322 Query 44277 AGCCAGGGCCGATTTACTCAAACCGGCCTTCTCTCTCATCTCATACAGCATTTCGACCAG 44336 ||||| || || || | || || || || |||||||| || || | |||||| |||| Sbjct 323 GGCCAGCGCAGACTTTGTTAACCCCGCTTTTTCTCTCATTTCGTATAACATTTCTACCAT 382 Query 44337 CGCCAGTTCTTTATCTGCTTCCTGATAACCCCGGATTGCCTCCGGGGTGTTGAGCAGACT 44396 | |||||||||| || || || | ||| || | || || || | || ||||| | Sbjct 383 CTCCAGTTCTTTGTCAGCATCTTCATACCCTTTAACAGCTTCTGGAGCATTAAGCAGTTT 442 Query 44397 TTCTTTAACCTGGTTAAATGGGATGCCTTTTACTTTCATTCACTCATCTCCTTCAGGCGC 44456 || || |||||| | ||||| | |||||||||||||| ||||||||||||||||| Sbjct 443 TTGCTTTACCTGGCTGAATGGAACACCTTTTACTTTCATCATTTCATCTCCTTCAGGCGC 502 Query 44457 GTTCTTGCTATTTCTATGGCCCCTGGCGGGGTTTTCGGTGTCTTCTTAACAAATGCATGC 44516 | || || ||||| || || | || || || | ||||| || |||||||||||| Sbjct 503 ATCCTGGCGATTTCAATAGCTTTCGTTGGTGTCTTTTGCGTCTTTTTCACAAATGCATGC 562 Query 44517 AGTAGGTAAATTTCGTGGCCAACTGCGTAAGCGTATAACGTTCTTGCTATGTTCTTATCT 44576 || || |||||||||| || ||| |||||||| | || ||||| || || ||||| Sbjct 563 AGCAGATAAATTTCGTTACCCGTTGCATAAGCGTACAGTGTCCTTGCGATATTTTTATCC 622 Query 44577 CCAACCCGTAACTCAAACAGCCCACCGCCAATTACGCGGCTATGAGGCATTTTTAATTTA 44636 || || | | ||||| ||||| ||||||||||| ||||| ||||| ||||| | ||| Sbjct 623 CCGACTCTCAGTTCAAAAAGCCCTCCGCCAATTACACGGCTGTGAGGTATTTTCATTTTG 682 Query 44637 TTCCCTTCACTTTCCAGCCTTTCAATCAACCTGGTCATCCGGCCTCGTAGCTCATCTGGT 44696 || ||||| |||||||| |||||||| |||| ||| || || || || | |||||| Sbjct 683 TTACCTTCCTGTTCCAGCCGTTCAATCAGTCTGGCCATGCGACCACGCAGATTGTCTGGT 742 Query 44697 AATTCCTGAAGCTCATCCAGTGCCGCCGGGTGGGTTATTACGTTAAACATAGCATATCCT 44756 |||||| | |||||||||||||| | |||||| || || || ||||||||| ||| ||| Sbjct 743 AATTCCAGCAGCTCATCCAGTGCGGTCGGGTGAGTAATCACATTAAACATATTATAGCCT 802 Query 44757 CCTAGCGTGTATAAATATACCAAAA 44781 || | | || ||||| |||| || Sbjct 803 CCGAAAGAATA-AAATACACCATAA 826 >seq1603 Length=11327 Score = 105 bits (116), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 32514 CACCACCGGAGTTCCTACACTCGTTGGTGGTGACCCAGACAAGGGTAGGAATACCGGCC- 32572 |||||||||||||||||| ||| | ||||||||||| || ||||||||||||||||| Sbjct 4554 CACCACCGGAGTTCCTACGCTCATGGGTGGTGACCCGAACGGGGGTAGGAATACCGGCCT 4613 Query 32573 -CAATCAGCTACCGGCCAGCCCGAAAGCTGCCCTGCCTGAGCCACCATAAT 32622 ||| | ||||||||||||||| ||||||| ||| | ||||||| || Sbjct 4614 TCAA--GGAAACCGGCCAGCCCGAAGGCTGCCCCGCCCGGACCACCATTAT 4662 >seq2008 Length=9006 Score = 100 bits (110), Expect = 9e-17 Identities = 241/363 (66%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 16625 TACAGCTTTAACCAGCTGGAAGTGACGGCCATCGGGTGTACTCGACAGAGCGAAGCCCAC 16684 ||| || ||||| |||||| | | || ||||| || || || || || || || Sbjct 8649 TACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGCGCAG 8708 Query 16685 CGTAAGGGCCTGTGGGGCATACTGACCAACAACAAAGACCGCATGGTTGAGATTGATGTG 16744 || ||| ||||| | || |||||| ||| ||||| ||| | || ||| Sbjct 8709 CGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCGTGTC 8768 Query 16745 GGGCTGGACGGTAAAATCCCGCAGCCGGGCTACATCATTGGACTGGCTGATGAACTTCTG 16804 || |||||||| ||||| | ||| |||||| || || | ||||| ||||| ||| Sbjct 8769 GGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACTGCTG 8828 Query 16805 GCCGGACG---CGTGAACGGCGGGCGTATCAGCGCAGTTAATGGACGGGTGATTACCCTT 16861 ||||| || |||| || ||||| ||| || || || || || || ||||| Sbjct 8829 GCCGGTCGGCCCGTG---GGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCTG 8885 Query 16862 GACCGGGATACTGATGCAAAAGCTGGTGACCGGCTGCAGCTGAACCTGCCGTCAGGCATA 16921 ||||| || || | || ||| | |||||||||||| || |||||||| |||| Sbjct 8886 GACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCCGACGGCAAG 8945 Query 16922 TCTCAGGCCCGGACGATCCAGTCAGTCAACGGTCTCCGACAGGTCACGGTTACGACGGCG 16981 | ||| || || | || |||| ||| ||| ||||||||||| || |||||| Sbjct 8946 TGCGAGGGGCGCACCGTGCAACTGGTCAGCGG---CCGCCAGGTCACGGTCACCACGGCG 9002 Query 16982 TAC 16984 ||| Sbjct 9003 TAC 9005 >seq955 Length=28751 Score = 86.0 bits (94), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 32517 CACCGGAGTTCCTACACTCGTTGGTGGTGACCCAGACAAGGGTAGGAATACCGGCCCAAT 32576 ||||| ||||||||| ||| |||||| | ||||||| |||||||||||||||| || Sbjct 14839 CACCG-AGTTCCTACGCTCATTGGTGATAGCCCAGACGGGGGTAGGAATACCGGCGTCAT 14897 Query 32577 CAGCTACCGGCCAGCCCGAAAGCTGCCCTGCCTGAGCCACCATA 32620 | | ||||||||| | | |||||| |||||||| |||||| Sbjct 14898 CGGAAACCGGCCAGGCTAATGCCTGCCCCGCCTGAGCTACCATA 14941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164986367671044