Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq3067 223 8e-54 seq4945 158 3e-34 seq7267 84.2 5e-12 >seq3067 Length=6736 Score = 223 bits (246), Expect = 8e-54 Identities = 386/553 (70%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 1960 CGTATTGGTCCGTGTCGCCGACGCGCTCGTAGACGCGGACGTACGACTTGCTACCGATCA 2019 |||| ||||| || || || || |||| || ||||||| ||| |||||| || | || Sbjct 4200 CGTACTGGTCGGTATCACCAACACGCTGATACACGCGGATGTAGGACTTGGAGCCAACCA 4259 Query 2020 CCTG-CAGTGCTTCGCCGATGGCTCGCATTGCCTCCAGCCAGCGCGGATCGGTGATGTCC 2078 |||| ||| || |||||||||||| |||| || | ||||||| |||||| || ||| Sbjct 4260 CCTGGCAG-GCGTCGCCGATGGCTTGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCC 4318 Query 2079 AATCGGCGCAGCGCGAGCACGCGGCCGGTGTTGATCTGGCCTTCCTTGTCGGTCGCAAAC 2138 | ||||||| ||| || |||||| | ||| ||| | ||||| | ||| ||| || Sbjct 4319 ATACGGCGCAACGCCAGGACGCGGGCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAG 4378 Query 2139 GCCTGCGTGACGATCGCCTGGATTTCGGGGCGTGCGTCCGTCGTCCAATCGCGAAGGCAC 2198 || | | || | || | |||||||||||| | || ||||| || || ||||| Sbjct 4379 GCATCATTTACCAGCGTGACCACTTCGGGGCGTGCCCCGGTGGTCCAGTCCCGCAGGCAT 4438 Query 2199 TCGTCGATCATCGACTTCGCGGCCTGCAAGCGTTCATCGAACGCGATGCGGTCTTGGATG 2258 ||||| |||| | | ||| ||||| | |||||| ||||| ||||||| || || | | Sbjct 4439 TCGTCAATCAATGCCCGCGCAGCCTGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGTACG 4498 Query 2259 GCACGCTGGATGCGGTAGCGGCCGTCGAACGAGTACAGGGTGACGTTGCCCTTCTTGCCG 2318 |||||| ||| | | || || ||||| | |||| |||| || |||||||| ||| Sbjct 4499 GCACGCATGATCTTGAAACGCCCATCGAAGCTGATCAGGCTGACATTTCCCTTCTTCCCG 4558 Query 2319 CCAACCTTCGAGCCATACTCCTCGGCCGAAAGGTCGATGAAGGCCGAGATATCACCGAAA 2378 || | || | ||| |||| |||||| || |||| ||||| |||||||||||| Sbjct 4559 CCGATCTGGGCGCCGTACTGCTCGGCGCTGAGTTCGACAAAGGCTTCAATATCACCGAAA 4618 Query 2379 ATTCGGGCTTTCAGCTCGACCAGCCCCTTCGATCTC-GTTTTGGCTTCGTCCGCCAGCTC 2437 ||| || | | |||| | | ||| | | | ||||| ||| |||| | Sbjct 4619 GCCGAGGCCTTGAATTTCGCCAG-CACGTCGCTGGCGGCGCGGGCTTTTTCCACCAGGCC 4677 Query 2438 GCGAACGAGGCGATCGCGCTCACGGTCGATCGGCTTGATCATGGTTTCCGGAATCAGGCA 2497 | || | | ||| ||||| ||||||| |||||||||||| ||||||| ||||| | Sbjct 4678 AAGCACCAAGGCATCCCGCTCCAGGTCGATAGGCTTGATCATGCTTTCCGGGATCAGTC- 4736 Query 2498 GCCTTT-CGCGTC 2509 || ||| |||||| Sbjct 4737 GCTTTTGCGCGTC 4749 >seq4945 Length=7671 Score = 158 bits (174), Expect = 3e-34 Identities = 665/1036 (64%), Gaps = 33/1036 (3%) Strand=Plus/Minus Query 14695 CGCCCGTCCAACCTGCGCGGCAAGCAAGGCCGCGTGATCATCGACGAGGCAGCGTTCCAC 14754 || |||||||||||||||||| || ||| || | |||||||| || |||||||| Sbjct 6708 CGTCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAAGCCGCGTTCCAT 6649 Query 14755 GAGCAGCTCGGCGAGCTGCTCAAGGCCGCGATGGCGCTGCTGATGTGGGGCGGTCAGGTT 14814 | | | | | ||||||||| || || || ||||| ||| |||| ||||||||| | || Sbjct 6648 GCGGACTTGGCCGAGCTGCTGAAAGCGGCCATGGCTCTGTTGATCTGGGGCGGTGAAGTC 6589 Query 14815 CACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCAATGAGCTGGTCACGGACGTC 14874 || | || || ||||||||| || ||||| || || || ||||||| || || Sbjct 6588 CATGTGATCAGCACCCACGACGGCACGGAGAACGCCTTTAACGACCTGGTCAACGAAATC 6529 Query 14875 CGTTCCGGCAAGAAGCCCTACAGC---CTGCATCGCATCACGTTCGCCGACGCAGTCCAG 14931 || | ||| |||| | | || || ||| ||| |||| || || || Sbjct 6528 CGGGCTGGC---AAGCGCAATGGCGAAGTGTTCCGCTGCACTTTCGGTGAAGCCGTTGCC 6472 Query 14932 GACGGGCTCTACCAGCGCATTTGCCTGCGCAAGGGCGAAGCCTGGACGGCC--GAAGGTG 14989 || || || ||| |||| | |||||||| || | | | | || | | || | || Sbjct 6471 GATGGTCTGTACAAGCGTGTCTGCCTGCGTAAAG--GTATTGAGTACAGACTTGAGGATG 6414 Query 14990 AAGCCAAGTGGGTCAAGGATATTCGCGCGTCGTACGGCGCGGATGCTGAGGAAGAGCTGG 15049 || | ||||| || | || || | ||||||| | || || |||||||||| Sbjct 6413 AAATCGCCTGGGTGAATGGCGTTTACGGTTTCTACGGCGATGCAGCCGACGAAGAGCTGG 6354 Query 15050 ACTGCGTGCCGAAGAACAGCGGCGGCGCATGGCTGTCGCGCGCGCTGATCGAGTCGCGCA 15109 |||||||||| | | ||||||| |||| || || ||| ||||| |||| Sbjct 6353 ACTGCGTGCCCACCCAGGGCGGCGGTGCATTCCTCAGCATGGCCCTGGTCGAGCAACGCA 6294 Query 15110 -TGTCGGCTGACACGCCGGTGCTGCGCTGGGCCTGCAAACAGGGTTTCGAGGTGCTTCCC 15168 | | || | | |||||||||||| || | | || |||| ||| | || Sbjct 6293 GTAACCGC-GCCGTGCCGGTGCTGCGACTTGCGTACCCGCAAGGTTACGAAACCATCGCC 6235 Query 15169 GACCACATCCGCGCAGCCGAATGCCGCGATTGGCTCGAAGCGACGCTCGGCCCGCTGCTC 15228 || || | ||| || || | | || ||| ||||| | | |||||||||| Sbjct 6234 GAGCATCTGCGCCTGGCTGAGTCTCTGGAGTGGTGCGAAGAGCATTTGCTCCCGCTGCTC 6175 Query 15229 ACGGCGCTCCCGGTCGACGCCCGCTCGTACAACGGCGAGGACTTCGGACGGACTGGCGAC 15288 ||||| ||||| | |||| | | | | ||| ||||||||| || | |||||| Sbjct 6174 TCGGCGATCCCGCTGGACGTACAGAGCTTCTATGGCATGGACTTCGGCCGCTCCGGCGAC 6115 Query 15289 CTGACGGTCCACGTGCCGCTGATCGAACAACAGAACCTGGTTCGC---CGCGTGCCGTTC 15345 || |||| | |||| || || || ||||||| ||| ||| ||| ||| || Sbjct 6114 CTCTCGGTTTTCTGGCCGTTGCTCAAAGAACAGAATCTG---CGCAAGCGCACGCCCTTT 6058 Query 15346 ATCGTCGAGCTGCGCAACGTGCCGTTCCGGCAGCAGGAGCAGATCGCCTTCTACCTGCTT 15405 | ||||||||||| ||||| |||||| ||| || ||||| |||||| | || Sbjct 6057 GTGGTCGAGCTGCGTAACGTCCCGTTCAAGCAACAACTTCAGATTAAGTTCTACATTATT 5998 Query 15406 GATCGGCTCCCGCGCTTCACGGGCGGCGCCTTCGACGCGCGGGGCAACGGCCAATACCTC 15465 ||| | || |||| |||||| ||||| |||| |||||| | || Sbjct 5997 CGTCGCTTACCCAACTTCCTCAAAGGCGCCGATGACGCCAGGGGTAACGGCTCGCAACTG 5938 Query 15466 GCAGAAGTCGCGATGCAG-CG-CTACGGC-GCATCGCGCATCCAGCAAGTGATGCTGTCC 15522 |||||| | ||| | || | |||| || | ||||| ||| |||||||| || Sbjct 5937 TCAGAAGATAC--TGCCGTCGAGTTCGGCTTCAAC-CGCATTGAGCGGGTGATGCTCACC 5881 Query 15523 GAGTCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCGGCGTTCGAAGACGGCACGATC 15582 ||| ||||| || || ||||||| || | ||||| || | ||||||| ||| || Sbjct 5880 GAGGGCTGGTACCGGGACAACATGCCACCGTTCAAGGCAGCCCTGGAAGACGACACCTTC 5821 Query 15583 GACGGCCTCCCGAAGGATGCCGACGTGCTCGCGGACCTGCGCGCCGTACAGGTCATCAAG 15642 ||| | |||| || ||||| || ||| | || || | | | ||||| Sbjct 5820 TACGACATCCCTGCCGACAAAGACGTAGTCAGTGACGTTCGGGCTTTCCGCATGGTCAAG 5761 Query 15643 GGCGTGCCGCGCATCCCGGACGTCCGCGCGACCGGCCAGGACGA------CGG---CAAG 15693 ||||| | ||||||||||| || | | | ||| ||| ||| |||| Sbjct 5760 GGCGTAGCCCGCATCCCGGAAAAACGGACCAATGAAAAGGGCGAAAAAGCCGGACCCAAG 5701 Query 15694 CGCCACGGCGACGCCG 15709 |||||||||||||||| Sbjct 5700 CGCCACGGCGACGCCG 5685 >seq7267 Length=1015 Score = 84.2 bits (92), Expect = 5e-12 Identities = 213/321 (66%), Gaps = 21/321 (7%) Strand=Plus/Plus Query 13338 TGCAGTACGTGCGCCGCGAAGACTACGTGCGCAACCAGACCGTCATCGAAGCCAAGCTCG 13397 |||| ||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| | Sbjct 661 TGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTG 720 Query 13398 ACGCGATCGCGCTCAGATTCGAAAACTTACAACTCCGGGGAAATCAATGACGCCCACCAA 13457 | ||| | || |||| | |||| | | ||| | ||| | ||| | || Sbjct 721 ATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATT-----AAAAGGACTGA-----AGTAA 770 Query 13458 TCCGCTGGGAATCGACCACGCCAAGGTGCGCCGCGAATCGCTGCGCTGGTATCTGATTCT 13517 || |||||| |||||| |||||| ||||| ||||||||||| | || Sbjct 771 -----TGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAA 825 Query 13518 GGCGCTGTACAACGCGCGGCCCGAGGAAGTCGTCGAGGACGTGATCCAGATG---ACGAT 13574 | | ||| ||| | |||| |||| || || || | || | ||| | || || || Sbjct 826 GACCCTGGACACCTCGCGCCCCGTAGA--TCCTC-ATGAGGCTATCGTGTTGTCCACCAT 882 Query 13575 GCGCTCGATCTTCGCCGACATCACGGCGCTTGAGGTGCGCAAGGAACTGGACTACCTCGC 13634 | |||| ||||| ||| | | ||| ||||| ||||| |||||||| || Sbjct 883 CCAGGGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTCGACTACCTGGC 942 Query 13635 CGATCGCGTGCTGGTGAAGCT 13655 ||| || ||||||| ||| Sbjct 943 CGACCGTAGCCTGGTGACGCT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117461155425480