Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq915 217 4e-52 >seq915 Length=38681 Score = 217 bits (240), Expect = 4e-52 Identities = 472/704 (67%), Gaps = 8/704 (1%) Strand=Plus/Plus Query 6162 GACGATGGCGGATGTCGCCAAGCGCCTCGACCCGAACGGGAAGGTCGACATCATCGTCGA 6221 |||| |||| || || |||||| ||| || ||||||||||| |||| || ||||| Sbjct 18288 GACGCTGGCTGACTGGGCTAAGCGCACCGATCCAAACGGGAAGGTAGACAAGATTGTCGA 18347 Query 6222 AATGCTGAACCAGACGAACCCGGTCTTGCAGGATATGACCGCGATCGAGGGCAATCTACC 6281 | | || |||||| ||| || || ||| |||| | |||||||| || || Sbjct 18348 ACTCCTTTCCCAGACAAACGAAATCCTGACGGACATGATGTTCGTAGAGGGCAACCTGCC 18407 Query 6282 GACAGGCCACCGCACGTCGGTTCGCACCGGTCTGCCCACACCGACGTGGCGCAAGCTGTA 6341 ||||| |||||||| | || || | ||| |||| | |||| |||||| |||| | Sbjct 18408 AACAGGGCACCGCACCACTGTGCGATCTGGTTTGCCATCTGCGACATGGCGCTTGCTGAA 18467 Query 6342 CGGCGGCGTTCTGCCGAACAAGAGCTCGACTGCACAGGTAACGGACAACTGCGGCATGCT 6401 | ||| || | ||| | ||| | || | |||||| || ||| |||||| ||||| Sbjct 18468 CTACGGTGTGCAGCCAAGCAAATCAACCACCGTACAGGTTACAGACTCCTGCGGGATGCT 18527 Query 6402 CGAAGCGTACGCGGAAGTCGACAAGGCGCTGGCCGATCTGAACGGCAACACCGCGGCATT 6461 ||| | || || || || || ||| | ||||| |||||||||||||| || || | ||| Sbjct 18528 GGAAACCTATGCTGAGGTTGATAAGTCTCTGGCTGATCTGAACGGCAATACTGCTGAATT 18587 Query 6462 CCGTCTGTCCGAAGACCGGGCGCAGATCGAGGGTATGAACCAGGAAGTTGCGCAGACGCT 6521 ||||||||| |||||||| || ||||| |||||||||||| | | || |||||||| Sbjct 18588 CCGTCTGTCGGAAGACCGTGCATTCATCGAAGGTATGAACCAGCAGATGGCTCAGACGCT 18647 Query 6522 GTTCTACGGCAATGACGGCATCGCCCCCGCCG-AATTCACGGGGCTGTCGCCGCGCTACA 6580 |||||||||| || | | | | ||| | | |||||| ||| ||||| | || ||| Sbjct 18648 GTTCTACGGCGATACCAGTGT-GAACCCACAGCAATTCATGGGCCTGTCATCCCGTTACT 18706 Query 6581 ACTCGTTGAGCGCCGAGAACAAGGACAACGTCATCGACGCTGGCGGCACCGGATCCGACA 6640 | | || | ||| | ||| | |||||||||||||| ||||| | || | Sbjct 18707 CCAGCAAGTCTGCAGGTAACGGCCAGAACATTATCGACGCTGGCGGTACCGGCACTGATA 18766 Query 6641 ACGCCTCGGCATGGCTCGTTGTGTGGGGCCCGAATACCTGCCACTCGATCTACCCCAAGG 6700 || |||| ||||| || || ||||| || ||| || |||| ||| || | Sbjct 18767 ACACCTCTATCTGGCTGGTGGTATGGGGTGAAAACACCGTTCATGGCATCTTCCCGAAAG 18826 Query 6701 GTTCGAAAGCAGGTCTTTCGGTCGAGGACAAGGGCCAGGTCACCATCGAAAATGCGGACG 6760 | |||||| || || | || || || || ||| | | |||| Sbjct 18827 GGCAGAAAGCTGGCCTACAGACTCAGAACCTTGGTGAGCAAACCCTGGTCGATGC----- 18881 Query 6761 GCAACGGCGGTCGGATGGAAGGTTACCGCACGCACTACAAGTGGGACATCGGCCTCACGC 6820 || || ||| | || || || || || ||||| ||||| | ||| || | | Sbjct 18882 -CAGTGGTGGTAAATACCAGGGCTATCGTACCCATTACAAATGGGATAACGGTCTGGCAC 18940 Query 6821 TGCGCGACTGGCGCTACGTGGCGCGGGTCTGCAACATCGACGTG 6864 |||| |||||||||||||| | ||| || ||||||||| ||| Sbjct 18941 TGCGTGACTGGCGCTACGTTGTGCGCATCGCCAACATCGATGTG 18984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135593881325676