Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq379 168 8e-37 >seq379 Length=57893 Score = 168 bits (186), Expect = 8e-37 Identities = 333/487 (68%), Gaps = 22/487 (5%) Strand=Plus/Minus Query 164605 AAAATTGTTAATGGTCC-TGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 || |||||| ||||| | ||| |||||||||||||||||| | || || | ||| | Sbjct 34337 AAGATTGTTTCCGGTCCATCCATT-TTGAACAAATATGTAGGTCAATCGGAGGAGAATAT 34279 Query 164664 TAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATT 164723 |||| ||||||| || |||||| ||||||||| || ||| | | | |||| Sbjct 34278 CAGAATGTTGTTTAGAGACGCTGAAATTGAACAAAAGCAACGTGGTGACGATTCTCAATT 34219 Query 164724 ACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT----------- 164772 |||| | || |||||||||| || |||||| |||| ||| |||||| Sbjct 34218 ACATATCATCATTTTTGATGAAATGGATGCTATTTGTAAATCTCGTGGTAGCAGATCTGG 34159 Query 164773 -GATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGA 164831 |||| | | |||| | || || ||||| | | | | || |||||||| || Sbjct 34158 TGATACTGGGGTAGGTGATTCGGTTGTCAATCAACTCTTGGCCATGATTGATGGTGTCGA 34099 Query 164832 ATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGC 164891 | || |||||||| | | | |||||||||||| || ||| | |||||||| || Sbjct 34098 GGCTTTGAATAATATCCTCGTCATTGGTATGACCAACAGAAAGGATATGATTGATGAGGC 34039 Query 164892 TTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGG 164951 |||| | || || ||||| || ||| | | ||||||| ||||| | ||||||| Sbjct 34038 TTTACTTCGTCCAGGTCGTTTGGAAGTACATGTAGAAATCTCCTTACCTAATGAAGAAGG 33979 Query 164952 ACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGAT-ATATTATCTC 165010 || ||||| || ||| | ||| ||||||||| ||| || |||| || | Sbjct 33978 TCGTGAACAAATCTTCAAAATACATACCGCTAAAATG---TCCAAAAATAATATCCTCGC 33922 Query 165011 CC--GATGTAGATTTAAATAAAATA-GCTGCCGAAACTAAAAATTATAGTGGTGCTGAAT 165067 || |||||| | ||||| | |||| ||| ||||||||||||||||||||||||||| Sbjct 33921 CCCAGATGTAAACTTAAA-ACAATATGCTCATGAAACTAAAAATTATAGTGGTGCTGAAA 33863 Query 165068 TAGAGGG 165074 | || || Sbjct 33862 TTGAAGG 33856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595814096138400