Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq3067 226 7e-55 seq6182 132 1e-26 >seq3067 Length=6736 Score = 226 bits (250), Expect = 7e-55 Identities = 323/455 (71%), Gaps = 0/455 (0%) Strand=Plus/Plus Query 2576 CCATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACC 2635 ||||||||||||||||| |||||||| |||| |||||||||||| || || || Sbjct 4163 CCATGTCACACCCCCGCAATATCAAGGCTGATGGGCTCGTACTGGTCGGTATCACCAACA 4222 Query 2636 CGCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCC 2695 |||| | | || | ||| | ||||| || || |||||| || ||||||||||| Sbjct 4223 CGCTGATACACGCGGATGTAGGACTTGGAGCCAACCACCTGGCAGGCGTCGCCGATGGCT 4282 Query 2696 TGCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTG 2755 ||||| || |||||||| ||||| || || | || ||||||| || || |||| | Sbjct 4283 TGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCCATACGGCGCAACGCCAGGACGCGG 4342 Query 2756 CCGGTACGGATGTTCCCAGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGATGACC 2815 | || ||||||| || |||||| ||||| ||||| || | |||||||| || Sbjct 4343 GCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAGGCATCATTTACCAGCGTGACCACT 4402 Query 2816 TCCGCGCGAGCACCTTCCGTCCATTCGTGGAGGCACTCGTCGATCAGCGCCTTGGCCGCC 2875 || | ||| || || ||||| || | ||||| ||||| |||| ||| || ||| Sbjct 4403 TCGGGGCGTGCCCCGGTGGTCCAGTCCCGCAGGCATTCGTCAATCAATGCCCGCGCAGCC 4462 Query 2876 TGCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACCG 2935 || ||||| |||||||| |||||| | || | ||| || |||| |||| | || || Sbjct 4463 TGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGTACGGCACGCATGATCTTGAAACGCCCA 4522 Query 2936 TCGAAGCTGACCAGAGAGGCGTTGCCCTTCTTGCCTCCTACCTTCGCCTGGTACTGCTCG 2995 |||||||||| ||| | | || |||||||| || || | || || |||||||||| Sbjct 4523 TCGAAGCTGATCAGGCTGACATTTCCCTTCTTCCCGCCGATCTGGGCGCCGTACTGCTCG 4582 Query 2996 GCCGACAGGGTGATGAAGGCTTCGATATCGCCGAA 3030 || || || |||||||| ||||| ||||| Sbjct 4583 GCGCTGAGTTCGACAAAGGCTTCAATATCACCGAA 4617 >seq6182 Length=1162 Score = 132 bits (146), Expect = 1e-26 Identities = 344/519 (66%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 12138 CGGCCAAGGCCGATGAGATCCCGCGGGCC--GCCGAGCAGTATCGCCGCGTGCTGGTTCG 12195 ||||||||||||| ||||||| | || || |||| || || |||| ||| || Sbjct 200 CGGCCAAGGCCGA---GATCCCG--GACCAAGCGGAGCGCTACCGTCGCGACCTGACCCG 254 Query 12196 AGCGGCGCATGCTGAGTGGGGACTGTCGGCGCCGATCGCTACGTTCGGTGCTCAAGTGCA 12255 || || ||||| ||||| || || ||| | | || |||| || || | || Sbjct 255 TATCGCCCAGGCTGAATGGGGCTTGGATGCTCCGTTGTCCACCTTCGCCGCACAGATCCA 314 Query 12256 TCAGGAGAGCCGCTGGC-GTGCTGATGCCCGCTCGCCCGTCGGCGCACAGGGCCTGGCGC 12314 ||||| ||||||||| || | || || ||||| ||||| || || ||| ||| | Sbjct 315 CCAGGAAAGCCGCTGGAAGTTC-GACGCGAAATCGCCGGTCGGTGCGCAAGGCTTGGGCC 373 Query 12315 AGTTTATGCCCGGTACCGCTGAGTGGATCGCCGGCCTGTATCCGGCCGCCCTCGGCACCA 12374 || | |||||| ||||| ||| | |||| |||| || |||||||| | | Sbjct 374 AGGTGATGCCCTCGACCGCCACCTGGCTTGCCGAGCTGTTCCCCAAGGCCCTCGGAAAGA 433 Query 12375 ACCAGCCGTTCAATCCAGGCTGGGCACTGCGCGCGCTGGTCACCTACGACCGTTGGCTCT 12434 | | |||| || || | ||| | ||| ||||| |||| ||| ||||| ||||| Sbjct 434 TCGAACCGTATAACCCGGTTTGGTCCATGCAGGCGCTTGTCAGCTATGACCGCTGGCTGG 493 Query 12435 ACGACCGAAACCAGGCCTCCAGCGAGTGTGATCGCTGGGCATTCGTACTGTCCGCTTACA 12494 |||| | |||||| || || || | |||| | | || ||||| || | Sbjct 494 CGAACCGCATCCAGGCGCGTGGCCCCTGCGAACAAGGGGCGCTGATCCTTTCCGCCTATA 553 Query 12495 ACGGCGGCCAAGGGTGGGTAAATCGCGACCGTAAGCTGGCCTCGGCATCCGGCGCCGACC 12554 ||||||| || ||||| | || || ||| |||| ||||| || ||||| | Sbjct 554 ACGGCGGTTTTGGCTGGGTGATCAAAGATCGCAAGTTGGCATCGGCTAAGGGTGCCGATC 613 Query 12555 AGCTGGCCTGGTTCGATTCCGTCGAGCGCTTCAACGCCGGGCGCTCGGCCGCCAACTTCC 12614 |||| |||||||| | || ||||| || ||||| ||| |||| ||||| ||| Sbjct 614 CGCTGACCTGGTTCAACTCTGTCGAACGGTTCAATAACGGCCGCTTCGCCGCTGCGTTCA 673 Query 12615 GCGAGAACCGCAACTACCCGCGCCTCATCCTGCTTCGCT 12653 | || ||||| | ||||||||||| |||||| | |||| Sbjct 674 GGGAAAACCGTCAATACCCGCGCCTGATCCTGTTGCGCT 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122871855883788