Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq540 123 2e-23 seq982 116 3e-21 seq322 89.7 5e-13 >seq540 Length=89862 Score = 123 bits (136), Expect = 2e-23 Identities = 199/283 (70%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 94742 GATTACTTTATCGCTAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACAC 94800 |||| |||| || | | |||||| |||| ||| || || ||||| |||| | || Sbjct 83897 GATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCATACCACCTCTTAATCTAAGTAC 83838 Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCC 94858 ||| || | || ||||||||||| | ||||||||| | || || || ||| ||| Sbjct 83837 CAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAG--AGAGGGTACGACCATCTTCC 83780 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| ||| ||||||||| |||||| || || || || ||||||||||| || | Sbjct 83779 AATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGG 83720 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| | |||||| | | ||||||| || || || | ||||| |||||| Sbjct 83719 ATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTTT 83660 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATATT 95021 || || | ||| || ||||| || ||||| | | || ||||| Sbjct 83659 CCGGTTAAAGTCTTTACAAAAATTTGCATTTTAAAAATATATT 83617 Score = 102 bits (112), Expect = 7e-17 Identities = 180/261 (69%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 94748 TTTATCGCTAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| || | | |||||| |||| ||| || || ||||| | || | || || || Sbjct 84347 TTTACCGGTCAAGGTTTTAACAAAAATTTGCATACCACCTCTGAGTCTGAGAACTAAATG 84288 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTT 94866 | ||| ||||||||||| | ||||||||| | || | ||| |||| ||||| Sbjct 84287 GAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGGCCATCTTCCAATTGTTT 84228 Query 94867 TCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGC 94926 ||| ||||||| | |||||| || || || || ||||||||||| || | ||||| | Sbjct 84227 ACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGGATTTTGGT 84168 Query 94927 CTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986 |||||| | | ||||||| || || || | ||||| ||||| || || | Sbjct 84167 CTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTTACCGGTCAA 84108 Query 94987 AGTTTTCACAAAGATCTGCAT 95007 || || |||||||| ||||| Sbjct 84107 GGTCTTAACAAAGATTTGCAT 84087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| | || | || || || | || ||||| ||||| | ||||| Sbjct 84093 TTTGCATACCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTAT 84034 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| | || || || ||| |||| ||||| ||| |||| || | |||||| || Sbjct 84033 AATCAG--AGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTG 83976 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || || ||||||||||| || | || || | ||||||| | | ||||||| Sbjct 83975 ATCGGGTGGGATACCTTCTTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGA 83916 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 83915 GCCCTCAACTTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 ||||||| || ||||| |||| | || | || | || ||||| ||||| | || Sbjct 84552 AATTTTAATTACCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGT 84493 Query 94830 TATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 | ||||| | || || || ||| |||| ||||| ||| |||| || | |||||| Sbjct 84492 TGTAATCAG--AGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTG 84435 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| || || ||||||||||| || | ||||| | |||||| | | ||||| Sbjct 84434 TTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTC 84375 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||||||||||| || || | ||||| ||||| || ||||| Sbjct 84374 AGAACCTTCAACTTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 >seq982 Length=41121 Score = 116 bits (128), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| | ||||| || | || ||||||||||| | Sbjct 2127 AAAAATTTGCATACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGAT 2186 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || ||| ||| || || ||| |||| ||||| ||| ||||||| | |||| Sbjct 2187 GTTGTAGTCG--GATAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTT 2244 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || || || |||||||||||||| | || || | ||||||| ||| ||| Sbjct 2245 TGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCGATGGTG 2304 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| ||||| || | ||||| ||||| || || | || || |||||||| ||| Sbjct 2305 TCAGAACCTTCGACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGC 2364 Query 95006 AT 95007 || Sbjct 2365 AT 2366 Score = 89.7 bits (98), Expect = 5e-13 Identities = 169/247 (68%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| | || | || || || | ||| ||||| ||||| | Sbjct 2583 AAAAATTTGCATACCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGAT 2642 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || ||| ||| || || ||| || | ||||| ||| | || || | |||| Sbjct 2643 GTTGTAGTCGG--ATAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTT 2700 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| || || |||||||||||||| | ||| || | |||||| | | ||| Sbjct 2701 TGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTG 2760 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| ||||| || || | || || ||||| || ||| Sbjct 2761 TCAGAACCTTCAACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGC 2820 Query 95006 ATGCTTA 95012 ||| ||| Sbjct 2821 ATGTTTA 2827 >seq322 Length=112280 Score = 89.7 bits (98), Expect = 5e-13 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| | ||||| || | || ||||| ||||| | Sbjct 11928 AAAAATTTGCATACCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGAT 11869 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | || || || ||| || | ||||| || |||| || | |||| Sbjct 11868 GTTGTAGTCAG--AGAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTT 11811 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| || || |||||||||||||| | ||||| | ||||||| | | || Sbjct 11810 TGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTA 11751 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| ||||| || || | || || |||||||| ||| Sbjct 11750 TCAGAACCTTCTACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGC 11691 Query 95006 AT 95007 || Sbjct 11690 AT 11689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247637302640