Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq886 237 3e-57 seq1668 149 1e-30 seq64 98.7 2e-15 >seq886 Length=30124 Score = 237 bits (262), Expect = 3e-57 Identities = 443/639 (69%), Gaps = 14/639 (2%) Strand=Plus/Plus Query 193558 ATCATATCTATGAGAAGATCACTCTTCATTATGGAGATCTAACTGATCCTGTAAATGTTA 193617 ||||| |||| ||| || | | | |||||||||||| |||| ||| | ||| | Sbjct 23491 ATCATTTCTA---GAA-ATGATTTTACATTATGGAGATTTAACAGATTCAACCAATTTAG 23546 Query 193618 TGGGTGTCATTAGGGCAGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATG 193677 | ||| | ||| || | || |||| || |||||||| ||||||||| ||||| Sbjct 23547 TTGGTATTATTTCAAAGATTAACCCAACTGAAATTTATAATCTCGGTGCTCAATCTCATG 23606 Query 193678 TTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTA 193737 ||||||| || ||||| ||| | || || ||| | ||||| |||| ||| ||| |||| Sbjct 23607 TTAAAGTATCATTTGATATGGCTGAATACACTGCCAATGTCGATGGTTTGGGATGTCTTC 23666 Query 193738 GAATACTTGAAGCAGTTCGTATGTTG-GGAATGGAGAAAGATGTTCGCATCTATCAGGCA 193796 | || | || || |||||| |||| || | || || | ||| |||| || || Sbjct 23667 GTATTTTAGATGCTATTCGTA-GTTGTGGTCTTGAAAAGAAGGTTAAGTTCTACCAAGCT 23725 Query 193797 TCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTT 193856 || ||| ||||| |||||| |||| | ||||||| |||||| ||||| ||||| Sbjct 23726 TCAACCTCTGAACTTTATGGTAAGGTTCGTGAAACTCCACAATCAGAGACCACTCCATTC 23785 Query 193857 CATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTAT 193916 | ||||| || || |||| || || || | || ||||||||| | |||||| Sbjct 23786 TACCCACGTTCACCATATGCCGTTGCCAAACAATTTGCTTATTGGATTGTTGTCAATTAT 23845 Query 193917 CGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGA 193976 |||||| | |||||| | || || ||||| | || || ||||||||||||||| Sbjct 23846 CGTGAGGCTTATGGAATGAGTGCCTGTAACGGTATCTTGTTTAACCACGAATCTCCAAGA 23905 Query 193977 AGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTT--TATCTAAGATCTCTGTTG 194034 |||||| || |||||||| | ||||| ||| | || | || ||| | | | Sbjct 23906 AGAGGTCCAACTTTTGTAACCAGAAAGAT--CACTCGTTTCGTTGCTCGTATCGCCCTCG 23963 Query 194035 GATTACAGAAGATTCTTTAT-CTT-GGTAATCTTAATGCTAAGAGGGATTGGGGACACGC 194092 || ||| |||| | || | ||| ||||| | |||||||| | |||||||| ||||| Sbjct 23964 GA-CACA-AAGAAACCTTGTACTTGGGTAACATCAATGCTAAACGTGATTGGGGTCACGC 24021 Query 194093 AAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGT 194152 || || || || ||||| |||||| | ||||| ||||| || || |||||| ||||| Sbjct 24022 TAAAGACTACGTCGAAGCTATGTGGCTCATGTTACAACAAGACCAAGTCGATGACTATGT 24081 Query 194153 GATTGCTACAGGTGAACAGTATTCTGTTAGAGACTTTGT 194191 ||||| || |||||| || | ||| | || ||||| Sbjct 24082 CATTGCCACTGGTGAAACCCATGCAGTTCGTGAATTTGT 24120 >seq1668 Length=40664 Score = 149 bits (164), Expect = 1e-30 Identities = 356/529 (67%), Gaps = 12/529 (2%) Strand=Plus/Minus Query 193671 AGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGA 193730 || |||||| | || || || ||||| || ||||| | |||| |||| | | || Sbjct 1513 AGCCATGTTCATGTGAGTTTCGAAATGCCGGAATATACGGCGAATGCGGATGGTATCGGG 1454 Query 193731 ACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTAT 193790 || | || | || ||||| | || || ||||| ||||||||| | | || ||| Sbjct 1453 ACATTAAGGCTCCTGGAAGCCATACGGATTTTGGGTATGGAGAAAAAAACCAGAATATAT 1394 Query 193791 CAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACT-CCACTATCAGAAACCAC 193849 ||||| ||||| ||| |||||||| || | |||| | || | | ||||| || Sbjct 1393 CAGGCCTCTACTTCTGAATTGTATGGTTTGGTGC-AGGCGGTTCCCCAAAGTGAAACGAC 1335 Query 193850 ACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAA 193909 || ||| |||| | |||||||||| || || || |||||| || ||||| | Sbjct 1334 GCCGTTTTATCCCAGGTCTCCTTATGCAGTGGCCAAAATGTATGCCTACTGGATTACGGT 1275 Query 193910 GAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATC 193969 ||||||||||| | ||| | ||||| || ||| ||| | |||||||| ||| Sbjct 1274 AAATTATCGTGAAGCTTATAACATGTACGCTTGTAATGGGATTTTATTCAATCATGAAAG 1215 Query 193970 TCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTC 194029 || |||||| || || ||||| || || || ||||| | | | | || || | Sbjct 1214 CCCTTTAAGAGGAGAAACTTTTGTGACCCGAAAAATTACCCGTGCAGCAGCGAAAATTGC 1155 Query 194030 TGTTGGATTACAGAAGATTCTTTATCTT--GGTAATCTTA-ATGCTAAGAGGGATTGGGG 194086 | ||| | |||| ||| ||||| || ||||| |||| || || | || ||||| Sbjct 1154 CTTGGGACTTCAGA--ATTGTTTATATTTAGGTAA-CTTATCAGCGCAGCGTGACTGGGG 1098 Query 194087 ACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGA 194146 ||| || || |||||| | ||||| |||||||| || | || ||||| || | || || Sbjct 1097 ACATGCTAAAGATTATATCGAAGCCATGTGGTTGATCCTTCAGCAGGAAAAAGCAGAAGA 1038 Query 194147 TTATGTGATTGCTACAGG--TGAACAGTATTCTGTTAGAGACTTTGTGA 194193 | ||||||||| ||||| | | || || |||| | || ||||||| Sbjct 1037 CTTTGTGATTGCAACAGGGATTACCACTA--CTGTCCGTGATTTTGTGA 991 >seq64 Length=121147 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/169 (74%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 144937 GGATATGAGGAACCTATTTTAGTATCTGGAACTGATGGTGTAGGAACTAAAATTGATATT 144996 ||||||| || || ||||||||||| |||||||||||||| || || ||| || | | Sbjct 36394 GGATATGTTGATCCAATTTTAGTATCAGGAACTGATGGTGTTGGTACAAAACTTAAAGTA 36453 Query 144997 GCACAAGCCGCTAAT-GACTATACAACTATTGGTATAGATCTTGTTGCCATGTGTGTGAA 145055 ||||||| || ||| || |||| ||||| ||| | |||||||||||||| || Sbjct 36454 GCACAAGAATTGGATAGAC-ATTCAACCATTGGACAGGATTTAGTTGCCATGTGTGTAAA 36512 Query 145056 TGATATAATAACCTGT----GGTGCGAAACCATTATACTTCTTAGATTA 145100 ||| ||| | ||| ||||| ||||||||| ||| |||||||| Sbjct 36513 TGACATAGT----TGTTCAAGGTGCTGAACCATTATTCTTTTTAGATTA 36557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807476725823440