Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq54 179 4e-40 seq222 145 8e-30 seq1819 95.1 1e-14 seq3596 82.4 8e-11 >seq54 Length=99412 Score = 179 bits (198), Expect = 4e-40 Identities = 588/910 (65%), Gaps = 22/910 (2%) Strand=Plus/Minus Query 21158 TCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAA 21217 |||||||||||| || | || |||||| || |||| || | |||||| || ||| Sbjct 88938 TCTTCTTTTTTT---ATGACGCCTGCTTTTTGGTATTCACCTACGCGTTTTTCAAAGAAA 88882 Query 21218 TTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAA 21276 || || || |||| | || || |||||||| || |||||||| ||| || | Sbjct 88881 TTGGTTTTCCCTTGTAGGGAGATCATCTCCATAAAGTCGAATGGATTGGTCACGTTGTA- 88823 Query 21277 TATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACA 21336 || ||| ||| || | ||| |||||| | ||| || ||||| || || || || Sbjct 88822 TACCTTAGAACACCCTAATTCAAGTAATAACCGATCAGCGACAAACTCGATGTACTGTTT 88763 Query 21337 CATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTT 21396 ||| || || |||||| || || | || ||||| | || | || | ||| | Sbjct 88762 CATCAAGTCGGCATTCATGCCAATGAGCTTAACAGGTAATGCATCAGTGACAAATTCCTG 88703 Query 21397 TTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAA 21456 ||| || | || || || ||| || | | ||| ||| | | | ||| Sbjct 88702 TTCAATTGCTACTGCATCGGTAATAATTTCTTTTACCCTTTCTTGTGGAAGTTGATTTTT 88643 Query 21457 TAATTGTTT---AAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTAT 21513 ||| || || | ||| | || ||||| ||||||||||| ||||| |||||| || Sbjct 88642 TAAGTGCTTGGTATACAATAGGCAAGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAAT 88583 Query 21514 TAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGA 21573 | ||| || || || | | ||||||||||||||| || ||||| | ||| || || || Sbjct 88582 GAGTTCGTTGGAGAAGCTAAGACCGGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCGA 88523 Query 21574 CGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632 ||||| ||| || || ||||||||||| || || || ||||| |||| | || |||| Sbjct 88522 -GCAAAAGCTACCAGAGAAGAAAATGCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAG 88464 Query 21633 CGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692 | | | | ||| || |||||| | ||||||| ||| |||| |||| || Sbjct 88463 CAAAACTCG---CTTGGTC---TATCCAACGTAAAGCCCATTCTGCTTTTTTCTTAACAC 88410 Query 21693 AATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNN 21752 | || | || || || || || ||||| ||||| |||| | ||| | ||| Sbjct 88409 AGTCGAGGGTGTCGATGGCATTGAAAAGGCGATTTCTTTCTTGAGGATCCTTAATGTAGG 88350 Query 21753 NNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGT 21812 ||| |||| ||||| ||||| |||| || ||||| || || | Sbjct 88349 TATCAATGAGGAGTGAATAGGTTTCTGAATGGATATTCTCTACAGCAATCTGGAAGCCAT 88290 Query 21813 AAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCAT 21872 |||| || | ||||||| | | || || || | ||| || || || ||||||| Sbjct 88289 AAAAGAATTTGGCCTCTGTATACTGTACTTCAGCTACAAAGTTTTCTGCTAAATTTTCAT 88230 Query 21873 TTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGT---T 21929 | || || || ||||| || ||||| || ||||||| | ||||| | |||| | Sbjct 88229 TAACAATACCGTCACTAGCTGCAAAGAAAGCCAATACGTGAGAGATAAAGTGTCGTTCAT 88170 Query 21930 CGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTG 21989 |||||| | || ||| ||| | |||| ||| || | || |||| | Sbjct 88169 CGTTAT---TCAAGCGGGCCCAGTCTTTGAGGTCTTGACTTAAGTCAATCTCCTCAGCGG 88113 Query 21990 TCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAA 22049 ||||||||||||| || || ||||| | |||| ||||||| || | || || | Sbjct 88112 TCCAAAAGCTAGCTTCTGCTTTCTTATAAAAGTTCCATATATCATGATGTTCGATAGGGA 88053 Query 22050 ATATTACAAA 22059 ||| |||||| Sbjct 88052 ATAATACAAA 88043 >seq222 Length=228455 Score = 145 bits (160), Expect = 8e-30 Identities = 375/559 (67%), Gaps = 13/559 (2%) Strand=Plus/Plus Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 |||||||||| ||| ||| | |||||| | ||||| |||| || | || || Sbjct 134780 TTTTTTGATATTCAGCGACTTTACCTTCGAATACATTTGATTTTCTTTGAAGGGAAATCA 134839 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA-T 21301 |||||| |||| |||||||| | | || | || || || |||||| ||| | Sbjct 134840 TTTCCATCCAATCGAATGGATTAGCGGCATTCCAGATCTTTTTGTAACCCAAAG-TGACT 134898 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 ||||| | ||| || |||||| || |||||| |||| | | |||||||| || Sbjct 134899 AATAAACGATCGGCACAAAATTCAATGTATTGAGACATGGCTCTGCTGTTCATACCAATG 134958 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | | ||| |||||||| | ||| | || || || | | ||||| ||| ||| Sbjct 134959 AGATCTACTGGAAGAGCATCTGTGATGAATTCCTTCTCACTGGCTACGGCATCACGAATG 135018 Query 21422 ATATTTATTATC-CTAGATGTACTAGGGGG-ATACAATAATTGTTTAAACATCAAACATG 21479 || || || || || | | | || || |||| | | ||||| | Sbjct 135019 ATTGTTTCGATGACTT--TGGCATCGAGTTTATTCACCAATTTCGAGTAGAGTAAACAGG 135076 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||||| |||||| ||||||||||| | ||| || | |||||| ||||| || || || | Sbjct 135077 CAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAAAGTCAATCCTG 135136 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATG 21598 |||| |||||||||||||| ||||| || || || |||| || || |||||| || Sbjct 135137 GCATCAATCCTCTCTTTTTCAACCAGAAAATCGA-ACAAAAACTGCCACTAAAGAATATA 135195 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 || || ||||| ||||| || || || |||||| | | ||||| | || ||| Sbjct 135196 CCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAA---AGATTTTGAATTTGTAATC 135252 Query 21659 CATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 ||| | |||||| | || || |||||| | ||| |||||| |||||||| || || Sbjct 135253 CATCTCAATGCCCAATCAGCTTTCTTCTTT-ACACATGGAATTGTTTCAATAGCATTAAA 135311 Query 21718 AAGATGAtttttttCATCT 21736 || | ||||||||||| Sbjct 135312 TAGTCTAGTTTTTTCATCT 135330 >seq1819 Length=3716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||||||||||||| || | ||| || || ||||| || || |||| || || || Sbjct 3444 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 3503 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 |||||||||||||| ||||| | | | ||||||| || |||||||||| | Sbjct 3504 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 3563 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 |||| ||||| ||||| || ||||| || |||| | || |||||| ||||||| Sbjct 3564 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 3623 >seq3596 Length=2072 Score = 82.4 bits (90), Expect = 8e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522 |||| | | || || ||||| |||||||||| || ||||| || || || ||||| Sbjct 24 TTTATAAAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATT 83 Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582 | ||| |||| || ||||| | ||||| ||||| ||||| || || || || | || Sbjct 84 ACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGC 142 Query 21583 TCCTGAA-AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 ||| | ||||||||||| || || || || || || || || ||||| Sbjct 143 TCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531849112539760