Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq5847 89.7 6e-13 seq3035 86.0 7e-12 >seq5847 Length=1187 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCA--ACTAA 7058 || ||| ||| ||||||| ||| || || ||||| || || | | ||| || | Sbjct 781 ACCGCTGCGTTAGCCTGTGCACCTGAGTGCGGTTGTACATTGACCCAG--GCAGCACCGA 724 Query 7059 ACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGC 7118 | |||| ||| ||||||||||| || | || || || ||||| | |||| || | Sbjct 723 ATAGTTTTTTTGCACGCTCAATCGCTAAATTTTCAATTTCATCTACAACCTCACATCCAC 664 Query 7119 CGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCG 7178 | ||||| ||||||||||| || || ||||| || ||||| |||| ||||| | Sbjct 663 CATAATAGCGTTTGCCTGGCAGGCCTTCCGCATATTTATTGGTTAAAACTGAACCAGCAG 604 Query 7179 CTTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCA 7220 ||| |||||| | | | || ||||||| |||||||||| Sbjct 603 CTTCCATAACCTGTTTGCTGACGAAGTTTTCAGATGCAATCA 562 >seq3035 Length=3869 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 6964 CAATACTGAATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACC 7023 |||||||| |||||||| ||| | ||| | | ||||||||||| ||||| | || Sbjct 1893 CAATACTGTGTCGCCTGGTTGCAGAAGTGCAAAGAACACAGCTTGGTTGGCCTGGGTGCC 1834 Query 7024 GGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGC 7083 ||| || ||||| ||||| |||| ||| | || |||||||| || || |||| || Sbjct 1833 GGAGTGTGGTTGCACGTTCACGAAGCCGCAGCCGAAAAGTTCTTTTGCGCGGTCAA-TGG 1775 Query 7084 CAGGTT-CTCGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATC 7142 ||| || ||||| | ||||| || ||||||| | || |||||||| || | Sbjct 1774 CAGCTTGCTCGACAACGTCGGCGAAATCAGCGCCGCCGTGGAAACGCTTGCCTGGGTAGC 1715 Query 7143 CCTCAGCATACTTGTTGGT 7161 | ||| | ||||||||| Sbjct 1714 CTTCAACGGTCTTGTTGGT 1696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553299827863920